Results 41 - 60 of 452 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 5' | -49.8 | NC_006273.1 | + | 121215 | 0.72 | 0.964032 |
Target: 5'- aGCGu---AAGACGCCccgcgucaccgGCGGcGGCGCCa -3' miRNA: 3'- gCGCuuuuUUUUGUGG-----------CGCC-CUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 56976 | 0.74 | 0.919229 |
Target: 5'- gGCGgcAAGAAGCacgACCGCGGuGGCGgCg -3' miRNA: 3'- gCGCuuUUUUUUG---UGGCGCC-CUGCgG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 129447 | 0.81 | 0.616726 |
Target: 5'- aCGgGAAAAAugcuguuccacguacAggUGCCGCGGGugGCCa -3' miRNA: 3'- -GCgCUUUUU---------------UuuGUGGCGCCCugCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 188664 | 0.72 | 0.964032 |
Target: 5'- gGCGuAAGAGAAACcgacccACCGCGuccccGACGCCg -3' miRNA: 3'- gCGC-UUUUUUUUG------UGGCGCc----CUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 156974 | 0.84 | 0.48318 |
Target: 5'- aCGCGAGAAGGGGCcgggguCCGCGGGcacCGCCg -3' miRNA: 3'- -GCGCUUUUUUUUGu-----GGCGCCCu--GCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 116489 | 0.71 | 0.982431 |
Target: 5'- aGCGAGAAGAug--UCGCGcGGACaGCCg -3' miRNA: 3'- gCGCUUUUUUuuguGGCGC-CCUG-CGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 234275 | 0.8 | 0.695363 |
Target: 5'- uGCGucagcuguCGCCGCGGGACGCg -3' miRNA: 3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 190872 | 0.71 | 0.982431 |
Target: 5'- aGUGuuacuAGGAGAuCGCCGCGgccgauGGGCGCCg -3' miRNA: 3'- gCGCu----UUUUUUuGUGGCGC------CCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 65981 | 0.71 | 0.980367 |
Target: 5'- uCGuCGAAGGAcgGCGCCGUGGccguUGCCg -3' miRNA: 3'- -GC-GCUUUUUuuUGUGGCGCCcu--GCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 88312 | 0.71 | 0.977892 |
Target: 5'- aCGCGugcu-GGACGCCGaCGcccagcgauuaacGGACGCCg -3' miRNA: 3'- -GCGCuuuuuUUUGUGGC-GC-------------CCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 142476 | 0.72 | 0.975953 |
Target: 5'- gGCGuuugcgucCACCGCGG-ACGCCg -3' miRNA: 3'- gCGCuuuuuuuuGUGGCGCCcUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 81088 | 0.72 | 0.970275 |
Target: 5'- aGaCGggGGGAAACACCGCcguggaucagGGGAUcCCa -3' miRNA: 3'- gC-GCuuUUUUUUGUGGCG----------CCCUGcGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 228685 | 0.72 | 0.964032 |
Target: 5'- uCGCGuuGAcacuGGAGCGCCGCGGucucGAUGCg -3' miRNA: 3'- -GCGCuuUU----UUUUGUGGCGCC----CUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 164583 | 0.73 | 0.960232 |
Target: 5'- aGCGcc-GGGAGCaucugguguucauGCUGUGGGGCGCCg -3' miRNA: 3'- gCGCuuuUUUUUG-------------UGGCGCCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 152284 | 0.73 | 0.944561 |
Target: 5'- cCGUGGuGGGAGGAC-CCGCGGGccACGUCg -3' miRNA: 3'- -GCGCU-UUUUUUUGuGGCGCCC--UGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 72632 | 0.74 | 0.935146 |
Target: 5'- gGCGGu--AGGACA-CGCGGG-CGCCg -3' miRNA: 3'- gCGCUuuuUUUUGUgGCGCCCuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 117884 | 0.74 | 0.93008 |
Target: 5'- aCGCGggG----GCGCCGUaGGACGCg -3' miRNA: 3'- -GCGCuuUuuuuUGUGGCGcCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 94480 | 0.76 | 0.866432 |
Target: 5'- cCGCGGAcu---GCGCCGgGGGGCGgCg -3' miRNA: 3'- -GCGCUUuuuuuUGUGGCgCCCUGCgG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 61333 | 0.76 | 0.858831 |
Target: 5'- aCGUGGGAAGAGAC-CCG-GGGACGgCu -3' miRNA: 3'- -GCGCUUUUUUUUGuGGCgCCCUGCgG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 98038 | 0.78 | 0.771759 |
Target: 5'- cCGCccGAGAGAACACCGUcuucuccGGGACGUCu -3' miRNA: 3'- -GCGcuUUUUUUUGUGGCG-------CCCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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