miRNA display CGI


Results 61 - 80 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 228685 0.72 0.964032
Target:  5'- uCGCGuuGAcacuGGAGCGCCGCGGucucGAUGCg -3'
miRNA:   3'- -GCGCuuUU----UUUUGUGGCGCC----CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 101707 0.72 0.973088
Target:  5'- aGCGAAuaccaucucgcGGAAGAUACCGUcGG-CGCCg -3'
miRNA:   3'- gCGCUU-----------UUUUUUGUGGCGcCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 56638 0.79 0.753683
Target:  5'- cCGCGAugGAGAAAACGCCgGCGGaGACGaCg -3'
miRNA:   3'- -GCGCU--UUUUUUUGUGG-CGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 170874 0.78 0.782022
Target:  5'- cCGCGAAGGccuACGCCGUGGGGCaguuugagaaGCCc -3'
miRNA:   3'- -GCGCUUUUuuuUGUGGCGCCCUG----------CGG- -5'
29719 5' -49.8 NC_006273.1 + 233195 0.76 0.858831
Target:  5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3'
miRNA:   3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 209532 0.75 0.894667
Target:  5'- uGCGGAu----ACGCCGCcGGGCGCUg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 234588 0.74 0.933149
Target:  5'- gGCGuccaccggguAGAACcCCGCGGGcCGCCg -3'
miRNA:   3'- gCGCuuuu------UUUUGuGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 41485 0.74 0.935146
Target:  5'- cCGCGGugacacAAACAgCGUcucGGGACGCCg -3'
miRNA:   3'- -GCGCUuuuu--UUUGUgGCG---CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 113900 0.73 0.944561
Target:  5'- cCGgGAAAGAGugcgacagcGugACCGCGGGGuCGCg -3'
miRNA:   3'- -GCgCUUUUUU---------UugUGGCGCCCU-GCGg -5'
29719 5' -49.8 NC_006273.1 + 118422 0.73 0.960588
Target:  5'- uGgGGAGGAAGAgGCCGCagagGGGAgagcCGCCg -3'
miRNA:   3'- gCgCUUUUUUUUgUGGCG----CCCU----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 102211 0.7 0.990402
Target:  5'- aCGCGAcggcgcGCGCaCGCGGGAuuuuCGCUg -3'
miRNA:   3'- -GCGCUuuuuuuUGUG-GCGCCCU----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 87811 0.7 0.990277
Target:  5'- -cCGAAGGuuAGCGCCGCGGcaccagagacagaGACcGCCg -3'
miRNA:   3'- gcGCUUUUuuUUGUGGCGCC-------------CUG-CGG- -5'
29719 5' -49.8 NC_006273.1 + 196211 0.71 0.977656
Target:  5'- cCGCGggGuucuacccgguGGACGCCGUGGcccGGCGUCg -3'
miRNA:   3'- -GCGCuuUuu---------UUUGUGGCGCC---CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 81554 0.71 0.978126
Target:  5'- gGCGAAcuAGuGCccgaACCGCGG-ACGCCa -3'
miRNA:   3'- gCGCUUuuUUuUG----UGGCGCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 190872 0.71 0.982431
Target:  5'- aGUGuuacuAGGAGAuCGCCGCGgccgauGGGCGCCg -3'
miRNA:   3'- gCGCu----UUUUUUuGUGGCGC------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 116489 0.71 0.982431
Target:  5'- aGCGAGAAGAug--UCGCGcGGACaGCCg -3'
miRNA:   3'- gCGCUUUUUUuuguGGCGC-CCUG-CGG- -5'
29719 5' -49.8 NC_006273.1 + 63452 0.71 0.984328
Target:  5'- aGCGGAGgcAAAGGCgagGCCGCGccGGccGCGCCg -3'
miRNA:   3'- gCGCUUU--UUUUUG---UGGCGC--CC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 20910 0.71 0.985561
Target:  5'- aCGUGGuuccucguucugccGGAGCACCGUGGG-UGCCg -3'
miRNA:   3'- -GCGCUuuu-----------UUUUGUGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 116574 0.71 0.986066
Target:  5'- cCGCGAcgAAGAGAACcccgccgucCCGCGGGucCGCa -3'
miRNA:   3'- -GCGCU--UUUUUUUGu--------GGCGCCCu-GCGg -5'
29719 5' -49.8 NC_006273.1 + 64576 0.7 0.987651
Target:  5'- gGCGGuu-GGGGCGCCGauucccaGGGCGCCu -3'
miRNA:   3'- gCGCUuuuUUUUGUGGCgc-----CCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.