miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2972 5' -54.9 NC_001493.1 + 16550 0.66 0.938057
Target:  5'- gCCCcAGG-GCGAgagGCCCGUGGACgGUc -3'
miRNA:   3'- aGGGcUCUaCGUU---UGGGCGCUUGgCG- -5'
2972 5' -54.9 NC_001493.1 + 11267 0.66 0.938057
Target:  5'- cCCUGuGA-GCGcgaCCGcCGGACCGCg -3'
miRNA:   3'- aGGGCuCUaCGUuugGGC-GCUUGGCG- -5'
2972 5' -54.9 NC_001493.1 + 126821 0.66 0.938057
Target:  5'- cCCUGuGA-GCGcgaCCGcCGGACCGCg -3'
miRNA:   3'- aGGGCuCUaCGUuugGGC-GCUUGGCG- -5'
2972 5' -54.9 NC_001493.1 + 79306 0.66 0.938057
Target:  5'- aUCCUGAGGaucacgUGCGcggaCGCGAACaCGCu -3'
miRNA:   3'- -AGGGCUCU------ACGUuuggGCGCUUG-GCG- -5'
2972 5' -54.9 NC_001493.1 + 132104 0.66 0.938057
Target:  5'- gCCCcAGG-GCGAgagGCCCGUGGACgGUc -3'
miRNA:   3'- aGGGcUCUaCGUU---UGGGCGCUUGgCG- -5'
2972 5' -54.9 NC_001493.1 + 128862 0.66 0.938057
Target:  5'- cCCUGGGAgacucgGgGAA-CUGCGGGCCGUg -3'
miRNA:   3'- aGGGCUCUa-----CgUUUgGGCGCUUGGCG- -5'
2972 5' -54.9 NC_001493.1 + 129563 0.66 0.938057
Target:  5'- aCCCG-GGUGCGGGCCCacacguGUGAAUucacgggaaaCGCu -3'
miRNA:   3'- aGGGCuCUACGUUUGGG------CGCUUG----------GCG- -5'
2972 5' -54.9 NC_001493.1 + 14008 0.66 0.938057
Target:  5'- aCCCG-GGUGCGGGCCCacacguGUGAAUucacgggaaaCGCu -3'
miRNA:   3'- aGGGCuCUACGUUUGGG------CGCUUG----------GCG- -5'
2972 5' -54.9 NC_001493.1 + 13308 0.66 0.938057
Target:  5'- cCCUGGGAgacucgGgGAA-CUGCGGGCCGUg -3'
miRNA:   3'- aGGGCUCUa-----CgUUUgGGCGCUUGGCG- -5'
2972 5' -54.9 NC_001493.1 + 111935 0.66 0.938057
Target:  5'- aCCCGAuucaaaGAUGUGGagcuuuaucGCCC-CGAAUCGCu -3'
miRNA:   3'- aGGGCU------CUACGUU---------UGGGcGCUUGGCG- -5'
2972 5' -54.9 NC_001493.1 + 37382 0.66 0.938057
Target:  5'- uUCCCGcgcGGAgggGCu-GCCaCGCGAAacucuucacCCGCg -3'
miRNA:   3'- -AGGGC---UCUa--CGuuUGG-GCGCUU---------GGCG- -5'
2972 5' -54.9 NC_001493.1 + 40252 0.66 0.936597
Target:  5'- cCCCGcucGUGUaacuuuucuguccuGAGCUCGCGAAUCGUg -3'
miRNA:   3'- aGGGCuc-UACG--------------UUUGGGCGCUUGGCG- -5'
2972 5' -54.9 NC_001493.1 + 62072 0.66 0.933105
Target:  5'- gCCCGuugGGAUaGCuGAgCCGCGGuCCGUg -3'
miRNA:   3'- aGGGC---UCUA-CGuUUgGGCGCUuGGCG- -5'
2972 5' -54.9 NC_001493.1 + 120085 0.66 0.933105
Target:  5'- aCCCGAauaaGAUGuCGGugaccCCCGCcgcuGCCGCg -3'
miRNA:   3'- aGGGCU----CUAC-GUUu----GGGCGcu--UGGCG- -5'
2972 5' -54.9 NC_001493.1 + 4531 0.66 0.933105
Target:  5'- aCCCGAauaaGAUGuCGGugaccCCCGCcgcuGCCGCg -3'
miRNA:   3'- aGGGCU----CUAC-GUUu----GGGCGcu--UGGCG- -5'
2972 5' -54.9 NC_001493.1 + 62641 0.66 0.933105
Target:  5'- aCCaCGAcg-GCgAAGCCCGCGGgaGCCGg -3'
miRNA:   3'- aGG-GCUcuaCG-UUUGGGCGCU--UGGCg -5'
2972 5' -54.9 NC_001493.1 + 79939 0.66 0.927911
Target:  5'- cCCCGcguGGUGaCAugggGGCUCGCcuuGAACCGCc -3'
miRNA:   3'- aGGGCu--CUAC-GU----UUGGGCG---CUUGGCG- -5'
2972 5' -54.9 NC_001493.1 + 74779 0.66 0.927911
Target:  5'- aUCCCaugGAGAUGau-ACCCGUGGAacacUUGCa -3'
miRNA:   3'- -AGGG---CUCUACguuUGGGCGCUU----GGCG- -5'
2972 5' -54.9 NC_001493.1 + 11036 0.66 0.927911
Target:  5'- cUCCCcGGGUGCGAcaaACUCGgCGGcUCGCu -3'
miRNA:   3'- -AGGGcUCUACGUU---UGGGC-GCUuGGCG- -5'
2972 5' -54.9 NC_001493.1 + 120280 0.66 0.927911
Target:  5'- gUUCGGGuuuggGCAcACCCGgGGGCCGg -3'
miRNA:   3'- aGGGCUCua---CGUuUGGGCgCUUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.