miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 38689 0.66 0.856665
Target:  5'- aGCUcCUGCCaCgCGCCCAgcagcACCAUCGg -3'
miRNA:   3'- gUGAcGGCGGcG-GCGGGUa----UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 97362 0.66 0.856665
Target:  5'- gGC-GCCGgCGCCGCCUAg--CGUCa -3'
miRNA:   3'- gUGaCGGCgGCGGCGGGUaugGUAGc -5'
29721 3' -59.9 NC_006273.1 + 72253 0.66 0.856665
Target:  5'- uGgUGCCuCCGCCGCCUcaGCCGg-- -3'
miRNA:   3'- gUgACGGcGGCGGCGGGuaUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 2425 0.66 0.856665
Target:  5'- gCGCgGCgGCUGCUGCCCGagcuggACCG-CGa -3'
miRNA:   3'- -GUGaCGgCGGCGGCGGGUa-----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 233581 0.66 0.856665
Target:  5'- aGCUcCUGCCaCgCGCCCAgcagcACCAUCGg -3'
miRNA:   3'- gUGAcGGCGGcG-GCGGGUa----UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 145962 0.66 0.856665
Target:  5'- cCGCUGCUgGCCuaCGCCUAUuucagauCCGUCu -3'
miRNA:   3'- -GUGACGG-CGGcgGCGGGUAu------GGUAGc -5'
29721 3' -59.9 NC_006273.1 + 227221 0.66 0.856665
Target:  5'- aGCUGCCGUaCGUgaUGCCuCAcgGCCAUCu -3'
miRNA:   3'- gUGACGGCG-GCG--GCGG-GUa-UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 56665 0.66 0.856665
Target:  5'- uCACcGCCGCCGCCaccgcuGCUCAUuuuCCG-CGu -3'
miRNA:   3'- -GUGaCGGCGGCGG------CGGGUAu--GGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 227496 0.66 0.856665
Target:  5'- gACaGuCCGCCGCCa-CCGUACCAgcuUCGu -3'
miRNA:   3'- gUGaC-GGCGGCGGcgGGUAUGGU---AGC- -5'
29721 3' -59.9 NC_006273.1 + 197318 0.66 0.856665
Target:  5'- gCGCgGCgGCUGCUGCCCGagcuggACCG-CGa -3'
miRNA:   3'- -GUGaCGgCGGCGGCGGGUa-----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 141010 0.66 0.856665
Target:  5'- gACUG-CGCCGCgGCUguUACCGaCGu -3'
miRNA:   3'- gUGACgGCGGCGgCGGguAUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 117760 0.66 0.856665
Target:  5'- --gUGCC-CCGCCaccaucaccgGCCUAuUACCGUCGg -3'
miRNA:   3'- gugACGGcGGCGG----------CGGGU-AUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 147688 0.66 0.849231
Target:  5'- cCGCUcaGCCGCCGCUGaCCAccGCCAcCa -3'
miRNA:   3'- -GUGA--CGGCGGCGGCgGGUa-UGGUaGc -5'
29721 3' -59.9 NC_006273.1 + 94033 0.66 0.849231
Target:  5'- -cUUGCUGCacgGCCGCCCGUugC-UCc -3'
miRNA:   3'- guGACGGCGg--CGGCGGGUAugGuAGc -5'
29721 3' -59.9 NC_006273.1 + 19145 0.66 0.849231
Target:  5'- uCGCaUGCCcaaguucuuuCCGCCGCCCAUguGCCG-CGc -3'
miRNA:   3'- -GUG-ACGGc---------GGCGGCGGGUA--UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 154929 0.66 0.849231
Target:  5'- gGCaGUaCGCCGCCGCCUuu-CCcUCGg -3'
miRNA:   3'- gUGaCG-GCGGCGGCGGGuauGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 227111 0.66 0.849231
Target:  5'- cCACgGCggcguggguaugCGCCGCUGCCC-UACCGgcucUCGu -3'
miRNA:   3'- -GUGaCG------------GCGGCGGCGGGuAUGGU----AGC- -5'
29721 3' -59.9 NC_006273.1 + 70349 0.66 0.849231
Target:  5'- gCACcGCUGCCG-CGCCCGagGgCAUCa -3'
miRNA:   3'- -GUGaCGGCGGCgGCGGGUa-UgGUAGc -5'
29721 3' -59.9 NC_006273.1 + 193868 0.66 0.849231
Target:  5'- uGCUGgCGCCGgCGCU---GCCAUCc -3'
miRNA:   3'- gUGACgGCGGCgGCGGguaUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 90616 0.66 0.849231
Target:  5'- aGCgagGCCacgGCCGCCGCgUCGUGCC-UCc -3'
miRNA:   3'- gUGa--CGG---CGGCGGCG-GGUAUGGuAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.