Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 233581 | 0.66 | 0.856665 |
Target: 5'- aGCUcCUGCCaCgCGCCCAgcagcACCAUCGg -3' miRNA: 3'- gUGAcGGCGGcG-GCGGGUa----UGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 71691 | 0.66 | 0.817786 |
Target: 5'- cCACcGCCGCCGCCuCCUcgGgUAUUGu -3' miRNA: 3'- -GUGaCGGCGGCGGcGGGuaUgGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 103534 | 0.66 | 0.825891 |
Target: 5'- uGCgGCCGCCGUagccggccaGCCCcagGCCGUgCGg -3' miRNA: 3'- gUGaCGGCGGCGg--------CGGGua-UGGUA-GC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 56665 | 0.66 | 0.856665 |
Target: 5'- uCACcGCCGCCGCCaccgcuGCUCAUuuuCCG-CGu -3' miRNA: 3'- -GUGaCGGCGGCGG------CGGGUAu--GGUaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 42167 | 0.66 | 0.817786 |
Target: 5'- ---cGCCGCCGCCGCCa--GCgGUa- -3' miRNA: 3'- gugaCGGCGGCGGCGGguaUGgUAgc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 95124 | 0.66 | 0.817786 |
Target: 5'- cCACUGCUcCCcaaaaaaacuCCGCCCGaACCGUCGc -3' miRNA: 3'- -GUGACGGcGGc---------GGCGGGUaUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 117591 | 0.66 | 0.833838 |
Target: 5'- uGCUucGCCagcaCCGCUGCCUuUGCCGUCu -3' miRNA: 3'- gUGA--CGGc---GGCGGCGGGuAUGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 227496 | 0.66 | 0.856665 |
Target: 5'- gACaGuCCGCCGCCa-CCGUACCAgcuUCGu -3' miRNA: 3'- gUGaC-GGCGGCGGcgGGUAUGGU---AGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 147688 | 0.66 | 0.849231 |
Target: 5'- cCGCUcaGCCGCCGCUGaCCAccGCCAcCa -3' miRNA: 3'- -GUGA--CGGCGGCGGCgGGUa-UGGUaGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 141010 | 0.66 | 0.856665 |
Target: 5'- gACUG-CGCCGCgGCUguUACCGaCGu -3' miRNA: 3'- gUGACgGCGGCGgCGGguAUGGUaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 233060 | 0.66 | 0.833051 |
Target: 5'- aGCU-CCGCCGCCagcggguacacguGCCCGU-CCAgCGg -3' miRNA: 3'- gUGAcGGCGGCGG-------------CGGGUAuGGUaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 117760 | 0.66 | 0.856665 |
Target: 5'- --gUGCC-CCGCCaccaucaccgGCCUAuUACCGUCGg -3' miRNA: 3'- gugACGGcGGCGG----------CGGGU-AUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 76440 | 0.66 | 0.817786 |
Target: 5'- aGCUGuaCCGCCGCguCGUCuCGUACUGUCa -3' miRNA: 3'- gUGAC--GGCGGCG--GCGG-GUAUGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 197318 | 0.66 | 0.856665 |
Target: 5'- gCGCgGCgGCUGCUGCCCGagcuggACCG-CGa -3' miRNA: 3'- -GUGaCGgCGGCGGCGGGUa-----UGGUaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 34100 | 0.66 | 0.833838 |
Target: 5'- uUACcGCCGUCGUcgCGCCCGUcGCCGcacUCGc -3' miRNA: 3'- -GUGaCGGCGGCG--GCGGGUA-UGGU---AGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 145962 | 0.66 | 0.856665 |
Target: 5'- cCGCUGCUgGCCuaCGCCUAUuucagauCCGUCu -3' miRNA: 3'- -GUGACGG-CGGcgGCGGGUAu------GGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 194521 | 0.66 | 0.84162 |
Target: 5'- ---cGCCGUCGCCGCCCcgAaaagCGa -3' miRNA: 3'- gugaCGGCGGCGGCGGGuaUgguaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 78511 | 0.66 | 0.817786 |
Target: 5'- -cCUGCgG-CGCCGCCCGgacaccgggcGCCGUCa -3' miRNA: 3'- guGACGgCgGCGGCGGGUa---------UGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 114305 | 0.66 | 0.84162 |
Target: 5'- uGCgUGUuaCGCgGCCGCCCGUGuCCGUg- -3' miRNA: 3'- gUG-ACG--GCGgCGGCGGGUAU-GGUAgc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 227111 | 0.66 | 0.849231 |
Target: 5'- cCACgGCggcguggguaugCGCCGCUGCCC-UACCGgcucUCGu -3' miRNA: 3'- -GUGaCG------------GCGGCGGCGGGuAUGGU----AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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