miRNA display CGI


Results 21 - 40 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 38167 0.66 0.833051
Target:  5'- aGCU-CCGCCGCCagcggguacacguGCCCGU-CCAgCGg -3'
miRNA:   3'- gUGAcGGCGGCGG-------------CGGGUAuGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 5841 0.66 0.833838
Target:  5'- gCAuCUGUCGCCGCCaauuggcgGCCCu--CCGuUCGg -3'
miRNA:   3'- -GU-GACGGCGGCGG--------CGGGuauGGU-AGC- -5'
29721 3' -59.9 NC_006273.1 + 23612 0.66 0.825891
Target:  5'- uCAC-GUCGCCGCCgaGCCCGgGCCugcUCa -3'
miRNA:   3'- -GUGaCGGCGGCGG--CGGGUaUGGu--AGc -5'
29721 3' -59.9 NC_006273.1 + 38689 0.66 0.856665
Target:  5'- aGCUcCUGCCaCgCGCCCAgcagcACCAUCGg -3'
miRNA:   3'- gUGAcGGCGGcG-GCGGGUa----UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 70349 0.66 0.849231
Target:  5'- gCACcGCUGCCG-CGCCCGagGgCAUCa -3'
miRNA:   3'- -GUGaCGGCGGCgGCGGGUa-UgGUAGc -5'
29721 3' -59.9 NC_006273.1 + 197318 0.66 0.856665
Target:  5'- gCGCgGCgGCUGCUGCCCGagcuggACCG-CGa -3'
miRNA:   3'- -GUGaCGgCGGCGGCGGGUa-----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 90616 0.66 0.849231
Target:  5'- aGCgagGCCacgGCCGCCGCgUCGUGCC-UCc -3'
miRNA:   3'- gUGa--CGG---CGGCGGCG-GGUAUGGuAGc -5'
29721 3' -59.9 NC_006273.1 + 227496 0.66 0.856665
Target:  5'- gACaGuCCGCCGCCa-CCGUACCAgcuUCGu -3'
miRNA:   3'- gUGaC-GGCGGCGGcgGGUAUGGU---AGC- -5'
29721 3' -59.9 NC_006273.1 + 194521 0.66 0.84162
Target:  5'- ---cGCCGUCGCCGCCCcgAaaagCGa -3'
miRNA:   3'- gugaCGGCGGCGGCGGGuaUgguaGC- -5'
29721 3' -59.9 NC_006273.1 + 227111 0.66 0.849231
Target:  5'- cCACgGCggcguggguaugCGCCGCUGCCC-UACCGgcucUCGu -3'
miRNA:   3'- -GUGaCG------------GCGGCGGCGGGuAUGGU----AGC- -5'
29721 3' -59.9 NC_006273.1 + 56665 0.66 0.856665
Target:  5'- uCACcGCCGCCGCCaccgcuGCUCAUuuuCCG-CGu -3'
miRNA:   3'- -GUGaCGGCGGCGG------CGGGUAu--GGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 19145 0.66 0.849231
Target:  5'- uCGCaUGCCcaaguucuuuCCGCCGCCCAUguGCCG-CGc -3'
miRNA:   3'- -GUG-ACGGc---------GGCGGCGGGUA--UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 97214 0.66 0.833838
Target:  5'- aGCUGCaacCCGCCuGCCCGcagGCCGUgGc -3'
miRNA:   3'- gUGACGgc-GGCGG-CGGGUa--UGGUAgC- -5'
29721 3' -59.9 NC_006273.1 + 42167 0.66 0.817786
Target:  5'- ---cGCCGCCGCCGCCa--GCgGUa- -3'
miRNA:   3'- gugaCGGCGGCGGCGGguaUGgUAgc -5'
29721 3' -59.9 NC_006273.1 + 141010 0.66 0.856665
Target:  5'- gACUG-CGCCGCgGCUguUACCGaCGu -3'
miRNA:   3'- gUGACgGCGGCGgCGGguAUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 117760 0.66 0.856665
Target:  5'- --gUGCC-CCGCCaccaucaccgGCCUAuUACCGUCGg -3'
miRNA:   3'- gugACGGcGGCGG----------CGGGU-AUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 60046 0.66 0.825891
Target:  5'- gGCUGaCCGCCcaacgacccCCGCCCAUugaCGUCa -3'
miRNA:   3'- gUGAC-GGCGGc--------GGCGGGUAug-GUAGc -5'
29721 3' -59.9 NC_006273.1 + 203459 0.66 0.84162
Target:  5'- cUACUGCUGCCGCCGgugucaCCgAUAauagguCUGUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGC------GGgUAU------GGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 187140 0.66 0.84162
Target:  5'- uCGCUGCCGuaGCUaguGCUcggCAUGCUGUCGg -3'
miRNA:   3'- -GUGACGGCggCGG---CGG---GUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 233581 0.66 0.856665
Target:  5'- aGCUcCUGCCaCgCGCCCAgcagcACCAUCGg -3'
miRNA:   3'- gUGAcGGCGGcG-GCGGGUa----UGGUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.