miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 78511 0.66 0.817786
Target:  5'- -cCUGCgG-CGCCGCCCGgacaccgggcGCCGUCa -3'
miRNA:   3'- guGACGgCgGCGGCGGGUa---------UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 147688 0.66 0.849231
Target:  5'- cCGCUcaGCCGCCGCUGaCCAccGCCAcCa -3'
miRNA:   3'- -GUGA--CGGCGGCGGCgGGUa-UGGUaGc -5'
29721 3' -59.9 NC_006273.1 + 227111 0.66 0.849231
Target:  5'- cCACgGCggcguggguaugCGCCGCUGCCC-UACCGgcucUCGu -3'
miRNA:   3'- -GUGaCG------------GCGGCGGCGGGuAUGGU----AGC- -5'
29721 3' -59.9 NC_006273.1 + 95124 0.66 0.817786
Target:  5'- cCACUGCUcCCcaaaaaaacuCCGCCCGaACCGUCGc -3'
miRNA:   3'- -GUGACGGcGGc---------GGCGGGUaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 134220 0.67 0.792589
Target:  5'- cUACgGCCGCCa-CGCCCGUGCCc--- -3'
miRNA:   3'- -GUGaCGGCGGcgGCGGGUAUGGuagc -5'
29721 3' -59.9 NC_006273.1 + 234135 0.67 0.774243
Target:  5'- gCGCUGCgaccacuugcgcaUGgCGCgGCCCGUGCUGUUGg -3'
miRNA:   3'- -GUGACG-------------GCgGCGgCGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 190903 0.67 0.775129
Target:  5'- ----aCCGCCGCuCGCCCGUugUcgCGc -3'
miRNA:   3'- gugacGGCGGCG-GCGGGUAugGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 24683 0.67 0.809529
Target:  5'- gCGCUGCCGUCGuCCGUUCcgacagcugGUGCUAUUa -3'
miRNA:   3'- -GUGACGGCGGC-GGCGGG---------UAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 156847 0.67 0.801128
Target:  5'- -uUUGuCCGCgUGCgCGCCCAU-CCGUCGc -3'
miRNA:   3'- guGAC-GGCG-GCG-GCGGGUAuGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 117503 0.67 0.78392
Target:  5'- gUugUGuCCGCCGCUGCCC---CCGUg- -3'
miRNA:   3'- -GugAC-GGCGGCGGCGGGuauGGUAgc -5'
29721 3' -59.9 NC_006273.1 + 120855 0.67 0.808695
Target:  5'- gGCgGCCGCgugucauaacgccCGCCGUgCAcGCCGUCGc -3'
miRNA:   3'- gUGaCGGCG-------------GCGGCGgGUaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 154231 0.67 0.809529
Target:  5'- gACcGCUucguGCgGCCGCCCAgcuCCAUCc -3'
miRNA:   3'- gUGaCGG----CGgCGGCGGGUau-GGUAGc -5'
29721 3' -59.9 NC_006273.1 + 166613 0.67 0.801128
Target:  5'- cCAUcGCCGCCGCCGCUuCAUGagGUgGg -3'
miRNA:   3'- -GUGaCGGCGGCGGCGG-GUAUggUAgC- -5'
29721 3' -59.9 NC_006273.1 + 131040 0.67 0.792589
Target:  5'- gCGCUaccugGCCGCgCGCCaGCCCAUcccccucucggcGCuCAUCGc -3'
miRNA:   3'- -GUGA-----CGGCG-GCGG-CGGGUA------------UG-GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 124527 0.67 0.809529
Target:  5'- cCACUG-UGCCaCCGCCCAUugACCuGUCa -3'
miRNA:   3'- -GUGACgGCGGcGGCGGGUA--UGG-UAGc -5'
29721 3' -59.9 NC_006273.1 + 73025 0.67 0.801128
Target:  5'- nCACUagCGCCGCCGCCUccACCAcCa -3'
miRNA:   3'- -GUGAcgGCGGCGGCGGGuaUGGUaGc -5'
29721 3' -59.9 NC_006273.1 + 86749 0.67 0.792589
Target:  5'- ---aGCCGCCG-CGUCCAacGCCGUCu -3'
miRNA:   3'- gugaCGGCGGCgGCGGGUa-UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 119393 0.67 0.804505
Target:  5'- gGCgGCCGUguucgaugaaacgcgCGCCGCCCGUcucaGCCAgCGc -3'
miRNA:   3'- gUGaCGGCG---------------GCGGCGGGUA----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 190937 0.67 0.809529
Target:  5'- aCGCUaGcCCGUCGCCGCCUcggggcacgGUGCCcUCc -3'
miRNA:   3'- -GUGA-C-GGCGGCGGCGGG---------UAUGGuAGc -5'
29721 3' -59.9 NC_006273.1 + 21697 0.67 0.775129
Target:  5'- --gUGCCaGCCGUCGCCgCAgGCCuuuGUCGg -3'
miRNA:   3'- gugACGG-CGGCGGCGG-GUaUGG---UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.