Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 227698 | 1.09 | 0.002151 |
Target: 5'- cCACUGCCGCCGCCGCCCAUACCAUCGg -3' miRNA: 3'- -GUGACGGCGGCGGCGGGUAUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 233221 | 0.83 | 0.117562 |
Target: 5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3' miRNA: 3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 38328 | 0.83 | 0.117562 |
Target: 5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3' miRNA: 3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 171132 | 0.82 | 0.139659 |
Target: 5'- gGCcGCCGCCGCaaCGCCCGUGCCcgCGg -3' miRNA: 3'- gUGaCGGCGGCG--GCGGGUAUGGuaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 85958 | 0.81 | 0.150249 |
Target: 5'- ---gGCCGUCGCCcCCCGUGCCAUCGg -3' miRNA: 3'- gugaCGGCGGCGGcGGGUAUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 119982 | 0.81 | 0.161175 |
Target: 5'- cCGCUGCCguacagcGCCGCCGCUCAUaauGCCGUCa -3' miRNA: 3'- -GUGACGG-------CGGCGGCGGGUA---UGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 17192 | 0.81 | 0.153938 |
Target: 5'- cCGCcGUCgGCCGCCGCCCAUGCCAcgCGa -3' miRNA: 3'- -GUGaCGG-CGGCGGCGGGUAUGGUa-GC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 41575 | 0.81 | 0.14664 |
Target: 5'- gCGCUGUCGCCGCCGCgCCAUAgCCuccUCGg -3' miRNA: 3'- -GUGACGGCGGCGGCG-GGUAU-GGu--AGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 85766 | 0.8 | 0.186517 |
Target: 5'- uCGCUGCCGUCGCCGUCC-UGCCcauUCGc -3' miRNA: 3'- -GUGACGGCGGCGGCGGGuAUGGu--AGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 183805 | 0.79 | 0.204988 |
Target: 5'- cCGCUGCCGCCGCCaCCCcu-CCGUCc -3' miRNA: 3'- -GUGACGGCGGCGGcGGGuauGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 83395 | 0.78 | 0.252376 |
Target: 5'- uGCUGCCGCCGCCaCCCGgcCCggCGg -3' miRNA: 3'- gUGACGGCGGCGGcGGGUauGGuaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 72670 | 0.78 | 0.241119 |
Target: 5'- -cUUGCCGCCGCCGCCaugGCCuUCGu -3' miRNA: 3'- guGACGGCGGCGGCGGguaUGGuAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 68881 | 0.78 | 0.23565 |
Target: 5'- cCACcGCUGCCGCCGCCaCGacaaacacUACCGUCGc -3' miRNA: 3'- -GUGaCGGCGGCGGCGG-GU--------AUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 73602 | 0.77 | 0.282408 |
Target: 5'- cCGCUGCCGCUGCCGCCUuc-CCuUCu -3' miRNA: 3'- -GUGACGGCGGCGGCGGGuauGGuAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 170277 | 0.77 | 0.282409 |
Target: 5'- aGCUGCaCGCCGaaGCCCGUgagcACCAUCa -3' miRNA: 3'- gUGACG-GCGGCggCGGGUA----UGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 65643 | 0.77 | 0.282408 |
Target: 5'- aCGCUGCCGCCGuuGCCU--GCCAa-- -3' miRNA: 3'- -GUGACGGCGGCggCGGGuaUGGUagc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 141810 | 0.77 | 0.288744 |
Target: 5'- cCGCgcagGCCGCCGCCGCUCAaguUGCCcaggcucacGUCGa -3' miRNA: 3'- -GUGa---CGGCGGCGGCGGGU---AUGG---------UAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 135544 | 0.77 | 0.282409 |
Target: 5'- uCGCcGCCGCCGCuccuccCGCCCAgccACCGUCGc -3' miRNA: 3'- -GUGaCGGCGGCG------GCGGGUa--UGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 68076 | 0.76 | 0.295192 |
Target: 5'- cCGCUGCCGCCGCUgugGCCggaGUGcCCGUCGc -3' miRNA: 3'- -GUGACGGCGGCGG---CGGg--UAU-GGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 118403 | 0.75 | 0.343453 |
Target: 5'- aGCcGCCGCUGCUGCCCAaGCCGcCGc -3' miRNA: 3'- gUGaCGGCGGCGGCGGGUaUGGUaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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