miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 227698 1.09 0.002151
Target:  5'- cCACUGCCGCCGCCGCCCAUACCAUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGCGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 38328 0.83 0.117562
Target:  5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3'
miRNA:   3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 233221 0.83 0.117562
Target:  5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3'
miRNA:   3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 171132 0.82 0.139659
Target:  5'- gGCcGCCGCCGCaaCGCCCGUGCCcgCGg -3'
miRNA:   3'- gUGaCGGCGGCG--GCGGGUAUGGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 41575 0.81 0.14664
Target:  5'- gCGCUGUCGCCGCCGCgCCAUAgCCuccUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGCG-GGUAU-GGu--AGC- -5'
29721 3' -59.9 NC_006273.1 + 85958 0.81 0.150249
Target:  5'- ---gGCCGUCGCCcCCCGUGCCAUCGg -3'
miRNA:   3'- gugaCGGCGGCGGcGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 17192 0.81 0.153938
Target:  5'- cCGCcGUCgGCCGCCGCCCAUGCCAcgCGa -3'
miRNA:   3'- -GUGaCGG-CGGCGGCGGGUAUGGUa-GC- -5'
29721 3' -59.9 NC_006273.1 + 119982 0.81 0.161175
Target:  5'- cCGCUGCCguacagcGCCGCCGCUCAUaauGCCGUCa -3'
miRNA:   3'- -GUGACGG-------CGGCGGCGGGUA---UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 85766 0.8 0.186517
Target:  5'- uCGCUGCCGUCGCCGUCC-UGCCcauUCGc -3'
miRNA:   3'- -GUGACGGCGGCGGCGGGuAUGGu--AGC- -5'
29721 3' -59.9 NC_006273.1 + 183805 0.79 0.204988
Target:  5'- cCGCUGCCGCCGCCaCCCcu-CCGUCc -3'
miRNA:   3'- -GUGACGGCGGCGGcGGGuauGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 68881 0.78 0.23565
Target:  5'- cCACcGCUGCCGCCGCCaCGacaaacacUACCGUCGc -3'
miRNA:   3'- -GUGaCGGCGGCGGCGG-GU--------AUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 72670 0.78 0.241119
Target:  5'- -cUUGCCGCCGCCGCCaugGCCuUCGu -3'
miRNA:   3'- guGACGGCGGCGGCGGguaUGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 83395 0.78 0.252376
Target:  5'- uGCUGCCGCCGCCaCCCGgcCCggCGg -3'
miRNA:   3'- gUGACGGCGGCGGcGGGUauGGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 65643 0.77 0.282408
Target:  5'- aCGCUGCCGCCGuuGCCU--GCCAa-- -3'
miRNA:   3'- -GUGACGGCGGCggCGGGuaUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 73602 0.77 0.282408
Target:  5'- cCGCUGCCGCUGCCGCCUuc-CCuUCu -3'
miRNA:   3'- -GUGACGGCGGCGGCGGGuauGGuAGc -5'
29721 3' -59.9 NC_006273.1 + 170277 0.77 0.282409
Target:  5'- aGCUGCaCGCCGaaGCCCGUgagcACCAUCa -3'
miRNA:   3'- gUGACG-GCGGCggCGGGUA----UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 135544 0.77 0.282409
Target:  5'- uCGCcGCCGCCGCuccuccCGCCCAgccACCGUCGc -3'
miRNA:   3'- -GUGaCGGCGGCG------GCGGGUa--UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 141810 0.77 0.288744
Target:  5'- cCGCgcagGCCGCCGCCGCUCAaguUGCCcaggcucacGUCGa -3'
miRNA:   3'- -GUGa---CGGCGGCGGCGGGU---AUGG---------UAGC- -5'
29721 3' -59.9 NC_006273.1 + 68076 0.76 0.295192
Target:  5'- cCGCUGCCGCCGCUgugGCCggaGUGcCCGUCGc -3'
miRNA:   3'- -GUGACGGCGGCGG---CGGg--UAU-GGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 118403 0.75 0.343453
Target:  5'- aGCcGCCGCUGCUGCCCAaGCCGcCGc -3'
miRNA:   3'- gUGaCGGCGGCGGCGGGUaUGGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.