miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 56573 0.75 0.373481
Target:  5'- ---cGCCGCCGCCGCCCGauccACCuUUGg -3'
miRNA:   3'- gugaCGGCGGCGGCGGGUa---UGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 90951 0.74 0.381261
Target:  5'- uGCgaGCCGCCGCCaCCCGaACCGUCc -3'
miRNA:   3'- gUGa-CGGCGGCGGcGGGUaUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 193162 0.74 0.381261
Target:  5'- gCACcgGCCGCCgaagcccacGCUGCCCGUucggcgGCCGUCGg -3'
miRNA:   3'- -GUGa-CGGCGG---------CGGCGGGUA------UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 78421 0.74 0.389149
Target:  5'- ---cGCCGCCGUcagcgucguCGUCCGUGCCAUCa -3'
miRNA:   3'- gugaCGGCGGCG---------GCGGGUAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 95806 0.74 0.397143
Target:  5'- -uCUGCCGCUGCCGCCUAaccuCCGcUCGc -3'
miRNA:   3'- guGACGGCGGCGGCGGGUau--GGU-AGC- -5'
29721 3' -59.9 NC_006273.1 + 202112 0.74 0.404427
Target:  5'- cCGCUGCCGCCGCaagGCCCcgcUggaacucggacccGCCGUCGu -3'
miRNA:   3'- -GUGACGGCGGCGg--CGGGu--A-------------UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 38383 0.74 0.413443
Target:  5'- uGCUGuuaCCGCCGCCGUCCGUcGCCGcCGc -3'
miRNA:   3'- gUGAC---GGCGGCGGCGGGUA-UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 163642 0.74 0.413443
Target:  5'- cCACUGCCGCCGCCaccaccaccGCCgGgcgaCGUCGg -3'
miRNA:   3'- -GUGACGGCGGCGG---------CGGgUaug-GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 75261 0.74 0.421746
Target:  5'- gCGCUgGCCGCCgcggcgGCCGCCuCAUACCAg-- -3'
miRNA:   3'- -GUGA-CGGCGG------CGGCGG-GUAUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 137185 0.73 0.43015
Target:  5'- uGCcGCCGCUGCCGCUCAgcgaGCuCGUCGc -3'
miRNA:   3'- gUGaCGGCGGCGGCGGGUa---UG-GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 89772 0.73 0.43015
Target:  5'- cCACca-CGaCCGCCGCCCAgACCGUCGc -3'
miRNA:   3'- -GUGacgGC-GGCGGCGGGUaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 191487 0.73 0.43865
Target:  5'- gGC-GCCGCCGCCGCUUggACCuUCGu -3'
miRNA:   3'- gUGaCGGCGGCGGCGGGuaUGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 163919 0.73 0.43865
Target:  5'- gGCUGCgauCGCCGCCGCCUcgAUCG-CGg -3'
miRNA:   3'- gUGACG---GCGGCGGCGGGuaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 178478 0.73 0.43865
Target:  5'- uGCUGCCGCCacuGUCGUCCGUGUCGUCc -3'
miRNA:   3'- gUGACGGCGG---CGGCGGGUAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 135879 0.73 0.447246
Target:  5'- aGCaGCCGCCGCCGCC---ACCAcCGg -3'
miRNA:   3'- gUGaCGGCGGCGGCGGguaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 154996 0.73 0.455935
Target:  5'- gCGCcGCUGCCGCCGCCacgGCCGcCGc -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGguaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 204600 0.73 0.464714
Target:  5'- cUACcGCCGCUGCUGCUguUAUCGUCGc -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGguAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 72614 0.73 0.47358
Target:  5'- cCGCUGCCGCCGCCaccaccaccGCCagcACCAcCGg -3'
miRNA:   3'- -GUGACGGCGGCGG---------CGGguaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 201147 0.72 0.48253
Target:  5'- cCGCUGCCuGCCgGCgGCCCuGUGCCG-CGg -3'
miRNA:   3'- -GUGACGG-CGG-CGgCGGG-UAUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 141775 0.72 0.491561
Target:  5'- aGCUGCgcagGCCGCCGCUCAaGCCG-CGg -3'
miRNA:   3'- gUGACGg---CGGCGGCGGGUaUGGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.