miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 194705 0.72 0.491561
Target:  5'- -cCUGCCacaucGCCGCUGUCCAUGCUuUCGu -3'
miRNA:   3'- guGACGG-----CGGCGGCGGGUAUGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 141775 0.72 0.491561
Target:  5'- aGCUGCgcagGCCGCCGCUCAaGCCG-CGg -3'
miRNA:   3'- gUGACGg---CGGCGGCGGGUaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 32826 0.72 0.500669
Target:  5'- aCGCUGCCGUCgGCCGCCaCGccgGCCA-CGc -3'
miRNA:   3'- -GUGACGGCGG-CGGCGG-GUa--UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 145130 0.72 0.500669
Target:  5'- gGCgauUCGCCGCCGCCgAUACCuuUCGa -3'
miRNA:   3'- gUGac-GGCGGCGGCGGgUAUGGu-AGC- -5'
29721 3' -59.9 NC_006273.1 + 181468 0.72 0.50067
Target:  5'- gUACUGCUGCCGCCagaccUCCAgcaacACCGUCGu -3'
miRNA:   3'- -GUGACGGCGGCGGc----GGGUa----UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 86610 0.72 0.50067
Target:  5'- gCACggcGCCGCCGCCGgCCUcgGUACCGa-- -3'
miRNA:   3'- -GUGa--CGGCGGCGGC-GGG--UAUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 196177 0.72 0.509852
Target:  5'- gCAC-GCUGCUGCCGCUCGgacgGCCGUaCGg -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGGUa---UGGUA-GC- -5'
29721 3' -59.9 NC_006273.1 + 161655 0.72 0.509852
Target:  5'- gGCcGCCGCCGCCaCCCAUGgCG-CGg -3'
miRNA:   3'- gUGaCGGCGGCGGcGGGUAUgGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 1284 0.72 0.509852
Target:  5'- gCAC-GCUGCUGCCGCUCGgacgGCCGUaCGg -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGGUa---UGGUA-GC- -5'
29721 3' -59.9 NC_006273.1 + 83991 0.72 0.519104
Target:  5'- uGCUGCCGCgGCUGUgCCAUugauccuugACCGUCa -3'
miRNA:   3'- gUGACGGCGgCGGCG-GGUA---------UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 87815 0.72 0.519104
Target:  5'- cCGCUGCC-CCGCCGCCCccGCUg--- -3'
miRNA:   3'- -GUGACGGcGGCGGCGGGuaUGGuagc -5'
29721 3' -59.9 NC_006273.1 + 45404 0.72 0.519104
Target:  5'- cCGCUGCCGCCuGCaGCCCAgucuCCG-CGa -3'
miRNA:   3'- -GUGACGGCGG-CGgCGGGUau--GGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 41923 0.72 0.519104
Target:  5'- gACuUGCCGUCGCUGUCCGUggaACUAUCu -3'
miRNA:   3'- gUG-ACGGCGGCGGCGGGUA---UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 183757 0.72 0.519104
Target:  5'- uGCUGuCCG-CGCCGCCgAgccUGCCGUCGc -3'
miRNA:   3'- gUGAC-GGCgGCGGCGGgU---AUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 34074 0.71 0.5378
Target:  5'- ---cGCCGCCGCCGUaguUACCGUUGu -3'
miRNA:   3'- gugaCGGCGGCGGCGgguAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 72318 0.71 0.5378
Target:  5'- cCGCcGUCGCCGCCGCCuCGgacuccugcACCGUCu -3'
miRNA:   3'- -GUGaCGGCGGCGGCGG-GUa--------UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 140517 0.71 0.54629
Target:  5'- gACUGCCGUcgagccggggCGUCGCCCGUccccaccACCGUCc -3'
miRNA:   3'- gUGACGGCG----------GCGGCGGGUA-------UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 73001 0.71 0.547236
Target:  5'- cCGCUcCCGCCGCCGCCaccGCCAcCa -3'
miRNA:   3'- -GUGAcGGCGGCGGCGGguaUGGUaGc -5'
29721 3' -59.9 NC_006273.1 + 140247 0.71 0.556723
Target:  5'- uCGCgGCCGCgGCUgaGCCUuUGCCGUCGc -3'
miRNA:   3'- -GUGaCGGCGgCGG--CGGGuAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 74576 0.71 0.565302
Target:  5'- aGCaUGCCGCCccaauccGCCGCCCAacUGCgCGUCc -3'
miRNA:   3'- gUG-ACGGCGG-------CGGCGGGU--AUG-GUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.