miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 114305 0.66 0.84162
Target:  5'- uGCgUGUuaCGCgGCCGCCCGUGuCCGUg- -3'
miRNA:   3'- gUG-ACG--GCGgCGGCGGGUAU-GGUAgc -5'
29721 3' -59.9 NC_006273.1 + 234459 0.66 0.84162
Target:  5'- ---cGCCGUCGCCGCCCcgAaaagCGa -3'
miRNA:   3'- gugaCGGCGGCGGCGGGuaUgguaGC- -5'
29721 3' -59.9 NC_006273.1 + 203459 0.66 0.84162
Target:  5'- cUACUGCUGCCGCCGgugucaCCgAUAauagguCUGUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGC------GGgUAU------GGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 194521 0.66 0.84162
Target:  5'- ---cGCCGUCGCCGCCCcgAaaagCGa -3'
miRNA:   3'- gugaCGGCGGCGGCGGGuaUgguaGC- -5'
29721 3' -59.9 NC_006273.1 + 187140 0.66 0.84162
Target:  5'- uCGCUGCCGuaGCUaguGCUcggCAUGCUGUCGg -3'
miRNA:   3'- -GUGACGGCggCGG---CGG---GUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 174921 0.66 0.84162
Target:  5'- ---gGCagagGUCGCCGCUgAUACUAUCGg -3'
miRNA:   3'- gugaCGg---CGGCGGCGGgUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 97214 0.66 0.833838
Target:  5'- aGCUGCaacCCGCCuGCCCGcagGCCGUgGc -3'
miRNA:   3'- gUGACGgc-GGCGG-CGGGUa--UGGUAgC- -5'
29721 3' -59.9 NC_006273.1 + 34100 0.66 0.833838
Target:  5'- uUACcGCCGUCGUcgCGCCCGUcGCCGcacUCGc -3'
miRNA:   3'- -GUGaCGGCGGCG--GCGGGUA-UGGU---AGC- -5'
29721 3' -59.9 NC_006273.1 + 117591 0.66 0.833838
Target:  5'- uGCUucGCCagcaCCGCUGCCUuUGCCGUCu -3'
miRNA:   3'- gUGA--CGGc---GGCGGCGGGuAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 5841 0.66 0.833838
Target:  5'- gCAuCUGUCGCCGCCaauuggcgGCCCu--CCGuUCGg -3'
miRNA:   3'- -GU-GACGGCGGCGG--------CGGGuauGGU-AGC- -5'
29721 3' -59.9 NC_006273.1 + 38167 0.66 0.833051
Target:  5'- aGCU-CCGCCGCCagcggguacacguGCCCGU-CCAgCGg -3'
miRNA:   3'- gUGAcGGCGGCGG-------------CGGGUAuGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 233060 0.66 0.833051
Target:  5'- aGCU-CCGCCGCCagcggguacacguGCCCGU-CCAgCGg -3'
miRNA:   3'- gUGAcGGCGGCGG-------------CGGGUAuGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 23612 0.66 0.825891
Target:  5'- uCAC-GUCGCCGCCgaGCCCGgGCCugcUCa -3'
miRNA:   3'- -GUGaCGGCGGCGG--CGGGUaUGGu--AGc -5'
29721 3' -59.9 NC_006273.1 + 60046 0.66 0.825891
Target:  5'- gGCUGaCCGCCcaacgacccCCGCCCAUugaCGUCa -3'
miRNA:   3'- gUGAC-GGCGGc--------GGCGGGUAug-GUAGc -5'
29721 3' -59.9 NC_006273.1 + 53568 0.66 0.825891
Target:  5'- aGCUGUCGCCuaCauaagaGCCCgGUGCUAUCGu -3'
miRNA:   3'- gUGACGGCGGcgG------CGGG-UAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 103534 0.66 0.825891
Target:  5'- uGCgGCCGCCGUagccggccaGCCCcagGCCGUgCGg -3'
miRNA:   3'- gUGaCGGCGGCGg--------CGGGua-UGGUA-GC- -5'
29721 3' -59.9 NC_006273.1 + 46272 0.66 0.825891
Target:  5'- gUACUGCaucaGCCGCCGCCauccuggaaGCCAc-- -3'
miRNA:   3'- -GUGACGg---CGGCGGCGGgua------UGGUagc -5'
29721 3' -59.9 NC_006273.1 + 99523 0.66 0.825891
Target:  5'- gGCgGCUGCUGCUGUUgGguUGCCGUCGu -3'
miRNA:   3'- gUGaCGGCGGCGGCGGgU--AUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 78511 0.66 0.817786
Target:  5'- -cCUGCgG-CGCCGCCCGgacaccgggcGCCGUCa -3'
miRNA:   3'- guGACGgCgGCGGCGGGUa---------UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 95124 0.66 0.817786
Target:  5'- cCACUGCUcCCcaaaaaaacuCCGCCCGaACCGUCGc -3'
miRNA:   3'- -GUGACGGcGGc---------GGCGGGUaUGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.