miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 78511 0.66 0.817786
Target:  5'- -cCUGCgG-CGCCGCCCGgacaccgggcGCCGUCa -3'
miRNA:   3'- guGACGgCgGCGGCGGGUa---------UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 42167 0.66 0.817786
Target:  5'- ---cGCCGCCGCCGCCa--GCgGUa- -3'
miRNA:   3'- gugaCGGCGGCGGCGGguaUGgUAgc -5'
29721 3' -59.9 NC_006273.1 + 76440 0.66 0.817786
Target:  5'- aGCUGuaCCGCCGCguCGUCuCGUACUGUCa -3'
miRNA:   3'- gUGAC--GGCGGCG--GCGG-GUAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 95124 0.66 0.817786
Target:  5'- cCACUGCUcCCcaaaaaaacuCCGCCCGaACCGUCGc -3'
miRNA:   3'- -GUGACGGcGGc---------GGCGGGUaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 154231 0.67 0.809529
Target:  5'- gACcGCUucguGCgGCCGCCCAgcuCCAUCc -3'
miRNA:   3'- gUGaCGG----CGgCGGCGGGUau-GGUAGc -5'
29721 3' -59.9 NC_006273.1 + 199500 0.67 0.809529
Target:  5'- uGCUgGCCGCCGCUGCacggcaUCAUGCUGggCGa -3'
miRNA:   3'- gUGA-CGGCGGCGGCG------GGUAUGGUa-GC- -5'
29721 3' -59.9 NC_006273.1 + 158995 0.67 0.809529
Target:  5'- -gUUGCUGCUGCUGCUCuUGCCuUCa -3'
miRNA:   3'- guGACGGCGGCGGCGGGuAUGGuAGc -5'
29721 3' -59.9 NC_006273.1 + 190937 0.67 0.809529
Target:  5'- aCGCUaGcCCGUCGCCGCCUcggggcacgGUGCCcUCc -3'
miRNA:   3'- -GUGA-C-GGCGGCGGCGGG---------UAUGGuAGc -5'
29721 3' -59.9 NC_006273.1 + 216180 0.67 0.809529
Target:  5'- uCGCUGCUaUCGCCGCCCGguaauUCGa -3'
miRNA:   3'- -GUGACGGcGGCGGCGGGUaugguAGC- -5'
29721 3' -59.9 NC_006273.1 + 24683 0.67 0.809529
Target:  5'- gCGCUGCCGUCGuCCGUUCcgacagcugGUGCUAUUa -3'
miRNA:   3'- -GUGACGGCGGC-GGCGGG---------UAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 124527 0.67 0.809529
Target:  5'- cCACUG-UGCCaCCGCCCAUugACCuGUCa -3'
miRNA:   3'- -GUGACgGCGGcGGCGGGUA--UGG-UAGc -5'
29721 3' -59.9 NC_006273.1 + 120855 0.67 0.808695
Target:  5'- gGCgGCCGCgugucauaacgccCGCCGUgCAcGCCGUCGc -3'
miRNA:   3'- gUGaCGGCG-------------GCGGCGgGUaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 119393 0.67 0.804505
Target:  5'- gGCgGCCGUguucgaugaaacgcgCGCCGCCCGUcucaGCCAgCGc -3'
miRNA:   3'- gUGaCGGCG---------------GCGGCGGGUA----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 38353 0.67 0.801128
Target:  5'- ---cGCCGCUGCCGCUCGUcaGCUucaCGg -3'
miRNA:   3'- gugaCGGCGGCGGCGGGUA--UGGua-GC- -5'
29721 3' -59.9 NC_006273.1 + 156847 0.67 0.801128
Target:  5'- -uUUGuCCGCgUGCgCGCCCAU-CCGUCGc -3'
miRNA:   3'- guGAC-GGCG-GCG-GCGGGUAuGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 73025 0.67 0.801128
Target:  5'- nCACUagCGCCGCCGCCUccACCAcCa -3'
miRNA:   3'- -GUGAcgGCGGCGGCGGGuaUGGUaGc -5'
29721 3' -59.9 NC_006273.1 + 166613 0.67 0.801128
Target:  5'- cCAUcGCCGCCGCCGCUuCAUGagGUgGg -3'
miRNA:   3'- -GUGaCGGCGGCGGCGG-GUAUggUAgC- -5'
29721 3' -59.9 NC_006273.1 + 122262 0.67 0.793449
Target:  5'- -uCUGCgGCCGCCGCCUuacauaggcaggcgACCAaacgCGg -3'
miRNA:   3'- guGACGgCGGCGGCGGGua------------UGGUa---GC- -5'
29721 3' -59.9 NC_006273.1 + 102592 0.67 0.792589
Target:  5'- uGCUGCCGCCGUCGUugacgcgaaUCAUAUaaaugcccggcaCGUCGu -3'
miRNA:   3'- gUGACGGCGGCGGCG---------GGUAUG------------GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 134220 0.67 0.792589
Target:  5'- cUACgGCCGCCa-CGCCCGUGCCc--- -3'
miRNA:   3'- -GUGaCGGCGGcgGCGGGUAUGGuagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.