miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 86749 0.67 0.792589
Target:  5'- ---aGCCGCCG-CGUCCAacGCCGUCu -3'
miRNA:   3'- gugaCGGCGGCgGCGGGUa-UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 102592 0.67 0.792589
Target:  5'- uGCUGCCGCCGUCGUugacgcgaaUCAUAUaaaugcccggcaCGUCGu -3'
miRNA:   3'- gUGACGGCGGCGGCG---------GGUAUG------------GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 134220 0.67 0.792589
Target:  5'- cUACgGCCGCCa-CGCCCGUGCCc--- -3'
miRNA:   3'- -GUGaCGGCGGcgGCGGGUAUGGuagc -5'
29721 3' -59.9 NC_006273.1 + 75568 0.67 0.792589
Target:  5'- aACUGCgGCgacugugcgCGCCGCUg--GCCAUCGa -3'
miRNA:   3'- gUGACGgCG---------GCGGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 117503 0.67 0.78392
Target:  5'- gUugUGuCCGCCGCUGCCC---CCGUg- -3'
miRNA:   3'- -GugAC-GGCGGCGGCGGGuauGGUAgc -5'
29721 3' -59.9 NC_006273.1 + 190749 0.67 0.78392
Target:  5'- cCACcaGCUGCCGCCGaaCGUACCAc-- -3'
miRNA:   3'- -GUGa-CGGCGGCGGCggGUAUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 190903 0.67 0.775129
Target:  5'- ----aCCGCCGCuCGCCCGUugUcgCGc -3'
miRNA:   3'- gugacGGCGGCG-GCGGGUAugGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 21697 0.67 0.775129
Target:  5'- --gUGCCaGCCGUCGCCgCAgGCCuuuGUCGg -3'
miRNA:   3'- gugACGG-CGGCGGCGG-GUaUGG---UAGC- -5'
29721 3' -59.9 NC_006273.1 + 80948 0.67 0.775129
Target:  5'- gGCUGCgGCgaGUCGCCCAgcgggucgGCCAgcUCGc -3'
miRNA:   3'- gUGACGgCGg-CGGCGGGUa-------UGGU--AGC- -5'
29721 3' -59.9 NC_006273.1 + 39242 0.67 0.774243
Target:  5'- gCGCUGCgaccacuugcgcaUGgCGCgGCCCGUGCUGUUGg -3'
miRNA:   3'- -GUGACG-------------GCgGCGgCGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 234135 0.67 0.774243
Target:  5'- gCGCUGCgaccacuugcgcaUGgCGCgGCCCGUGCUGUUGg -3'
miRNA:   3'- -GUGACG-------------GCgGCGgCGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 213248 0.67 0.766223
Target:  5'- gACgGCCGCCGCCGCU---ACCGc-- -3'
miRNA:   3'- gUGaCGGCGGCGGCGGguaUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 99257 0.67 0.766223
Target:  5'- cCGCUGCCaaguCCGCCGCUC--GCgGUCa -3'
miRNA:   3'- -GUGACGGc---GGCGGCGGGuaUGgUAGc -5'
29721 3' -59.9 NC_006273.1 + 111263 0.67 0.766223
Target:  5'- --aUGCCGCCGCCaacGCCgAgcuCUGUCGa -3'
miRNA:   3'- gugACGGCGGCGG---CGGgUau-GGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 179599 0.67 0.766223
Target:  5'- cCAUcgGCCGCCcaccGCUaCCCGUACuCAUCGg -3'
miRNA:   3'- -GUGa-CGGCGG----CGGcGGGUAUG-GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 106145 0.68 0.75721
Target:  5'- gGCUugGCCGCgGCgGCgCAcGCCAUCa -3'
miRNA:   3'- gUGA--CGGCGgCGgCGgGUaUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 43863 0.68 0.757209
Target:  5'- -cCUGaUCGCCGCCGaCCgAUACCG-CGu -3'
miRNA:   3'- guGAC-GGCGGCGGC-GGgUAUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 130872 0.68 0.757209
Target:  5'- uCACUGCCGCgcgacccgGCCGCCgAUcGCguUCGa -3'
miRNA:   3'- -GUGACGGCGg-------CGGCGGgUA-UGguAGC- -5'
29721 3' -59.9 NC_006273.1 + 118416 0.68 0.751753
Target:  5'- uGCUGCCGCagCGCUgccacugugcacguaGCCCGUcACgGUCGg -3'
miRNA:   3'- gUGACGGCG--GCGG---------------CGGGUA-UGgUAGC- -5'
29721 3' -59.9 NC_006273.1 + 28068 0.68 0.748097
Target:  5'- cCACccgUGUCGCCGCCGUcaCCAccgccgauCCGUCGa -3'
miRNA:   3'- -GUG---ACGGCGGCGGCG--GGUau------GGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.