miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 1284 0.72 0.509852
Target:  5'- gCAC-GCUGCUGCCGCUCGgacgGCCGUaCGg -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGGUa---UGGUA-GC- -5'
29721 3' -59.9 NC_006273.1 + 2425 0.66 0.856665
Target:  5'- gCGCgGCgGCUGCUGCCCGagcuggACCG-CGa -3'
miRNA:   3'- -GUGaCGgCGGCGGCGGGUa-----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 4201 0.71 0.566257
Target:  5'- ---cGCaCGCCGCCGugaCCCAUACCGcagcUCGg -3'
miRNA:   3'- gugaCG-GCGGCGGC---GGGUAUGGU----AGC- -5'
29721 3' -59.9 NC_006273.1 + 5841 0.66 0.833838
Target:  5'- gCAuCUGUCGCCGCCaauuggcgGCCCu--CCGuUCGg -3'
miRNA:   3'- -GU-GACGGCGGCGG--------CGGGuauGGU-AGC- -5'
29721 3' -59.9 NC_006273.1 + 14597 0.68 0.729605
Target:  5'- -gUUGCCGCgaGCCGCUgAcGCCGUUGg -3'
miRNA:   3'- guGACGGCGg-CGGCGGgUaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 17192 0.81 0.153938
Target:  5'- cCGCcGUCgGCCGCCGCCCAUGCCAcgCGa -3'
miRNA:   3'- -GUGaCGG-CGGCGGCGGGUAUGGUa-GC- -5'
29721 3' -59.9 NC_006273.1 + 18413 0.7 0.643535
Target:  5'- aCGCUGCgGCCGUgGCCaagacgGCCcgCGa -3'
miRNA:   3'- -GUGACGgCGGCGgCGGgua---UGGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 19145 0.66 0.849231
Target:  5'- uCGCaUGCCcaaguucuuuCCGCCGCCCAUguGCCG-CGc -3'
miRNA:   3'- -GUG-ACGGc---------GGCGGCGGGUA--UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 21221 0.71 0.566257
Target:  5'- gGCUGCCGCCGCUGUggcugCCGcUGCUgAUCGc -3'
miRNA:   3'- gUGACGGCGGCGGCG-----GGU-AUGG-UAGC- -5'
29721 3' -59.9 NC_006273.1 + 21697 0.67 0.775129
Target:  5'- --gUGCCaGCCGUCGCCgCAgGCCuuuGUCGg -3'
miRNA:   3'- gugACGG-CGGCGGCGG-GUaUGG---UAGC- -5'
29721 3' -59.9 NC_006273.1 + 23612 0.66 0.825891
Target:  5'- uCAC-GUCGCCGCCgaGCCCGgGCCugcUCa -3'
miRNA:   3'- -GUGaCGGCGGCGG--CGGGUaUGGu--AGc -5'
29721 3' -59.9 NC_006273.1 + 24683 0.67 0.809529
Target:  5'- gCGCUGCCGUCGuCCGUUCcgacagcugGUGCUAUUa -3'
miRNA:   3'- -GUGACGGCGGC-GGCGGG---------UAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 28068 0.68 0.748097
Target:  5'- cCACccgUGUCGCCGCCGUcaCCAccgccgauCCGUCGa -3'
miRNA:   3'- -GUG---ACGGCGGCGGCG--GGUau------GGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 32826 0.72 0.500669
Target:  5'- aCGCUGCCGUCgGCCGCCaCGccgGCCA-CGc -3'
miRNA:   3'- -GUGACGGCGG-CGGCGG-GUa--UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 34074 0.71 0.5378
Target:  5'- ---cGCCGCCGCCGUaguUACCGUUGu -3'
miRNA:   3'- gugaCGGCGGCGGCGgguAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 34100 0.66 0.833838
Target:  5'- uUACcGCCGUCGUcgCGCCCGUcGCCGcacUCGc -3'
miRNA:   3'- -GUGaCGGCGGCG--GCGGGUA-UGGU---AGC- -5'
29721 3' -59.9 NC_006273.1 + 38167 0.66 0.833051
Target:  5'- aGCU-CCGCCGCCagcggguacacguGCCCGU-CCAgCGg -3'
miRNA:   3'- gUGAcGGCGGCGG-------------CGGGUAuGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 38198 0.68 0.738892
Target:  5'- cCGC-GCCGCgGCCGCUCAU-CCGgagaCGg -3'
miRNA:   3'- -GUGaCGGCGgCGGCGGGUAuGGUa---GC- -5'
29721 3' -59.9 NC_006273.1 + 38274 0.7 0.595085
Target:  5'- ---cGCCGCCGgacCCGCCaucGCCGUCGg -3'
miRNA:   3'- gugaCGGCGGC---GGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 38326 0.7 0.604751
Target:  5'- uCGCcgUGUCGUCGCCGCC---ACCGUCGu -3'
miRNA:   3'- -GUG--ACGGCGGCGGCGGguaUGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.