miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 38328 0.83 0.117562
Target:  5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3'
miRNA:   3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 38353 0.67 0.801128
Target:  5'- ---cGCCGCUGCCGCUCGUcaGCUucaCGg -3'
miRNA:   3'- gugaCGGCGGCGGCGGGUA--UGGua-GC- -5'
29721 3' -59.9 NC_006273.1 + 38383 0.74 0.413443
Target:  5'- uGCUGuuaCCGCCGCCGUCCGUcGCCGcCGc -3'
miRNA:   3'- gUGAC---GGCGGCGGCGGGUA-UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 38689 0.66 0.856665
Target:  5'- aGCUcCUGCCaCgCGCCCAgcagcACCAUCGg -3'
miRNA:   3'- gUGAcGGCGGcG-GCGGGUa----UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 39242 0.67 0.774243
Target:  5'- gCGCUGCgaccacuugcgcaUGgCGCgGCCCGUGCUGUUGg -3'
miRNA:   3'- -GUGACG-------------GCgGCGgCGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 39772 0.68 0.748097
Target:  5'- gCGCuUGCUGgCGCCGCCUugggGCCGUg- -3'
miRNA:   3'- -GUG-ACGGCgGCGGCGGGua--UGGUAgc -5'
29721 3' -59.9 NC_006273.1 + 41575 0.81 0.14664
Target:  5'- gCGCUGUCGCCGCCGCgCCAUAgCCuccUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGCG-GGUAU-GGu--AGC- -5'
29721 3' -59.9 NC_006273.1 + 41923 0.72 0.519104
Target:  5'- gACuUGCCGUCGCUGUCCGUggaACUAUCu -3'
miRNA:   3'- gUG-ACGGCGGCGGCGGGUA---UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 42167 0.66 0.817786
Target:  5'- ---cGCCGCCGCCGCCa--GCgGUa- -3'
miRNA:   3'- gugaCGGCGGCGGCGGguaUGgUAgc -5'
29721 3' -59.9 NC_006273.1 + 43280 0.68 0.729605
Target:  5'- ---aGCCGCUGCCGCucCCGUugCGUg- -3'
miRNA:   3'- gugaCGGCGGCGGCG--GGUAugGUAgc -5'
29721 3' -59.9 NC_006273.1 + 43863 0.68 0.757209
Target:  5'- -cCUGaUCGCCGCCGaCCgAUACCG-CGu -3'
miRNA:   3'- guGAC-GGCGGCGGC-GGgUAUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 45229 0.69 0.701318
Target:  5'- aGCUGCUGCUGaagcacuUGCCCGUGCCGccCGg -3'
miRNA:   3'- gUGACGGCGGCg------GCGGGUAUGGUa-GC- -5'
29721 3' -59.9 NC_006273.1 + 45404 0.72 0.519104
Target:  5'- cCGCUGCCGCCuGCaGCCCAgucuCCG-CGa -3'
miRNA:   3'- -GUGACGGCGG-CGgCGGGUau--GGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 46272 0.66 0.825891
Target:  5'- gUACUGCaucaGCCGCCGCCauccuggaaGCCAc-- -3'
miRNA:   3'- -GUGACGg---CGGCGGCGGgua------UGGUagc -5'
29721 3' -59.9 NC_006273.1 + 46366 0.68 0.720241
Target:  5'- gGCUGUCGUCGCacaggcccccgaCGCCgAUACCcgCGc -3'
miRNA:   3'- gUGACGGCGGCG------------GCGGgUAUGGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 52545 0.68 0.748096
Target:  5'- uGCUGCagcagccgagcuCGUCGCCGCCguUGCCAc-- -3'
miRNA:   3'- gUGACG------------GCGGCGGCGGguAUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 53568 0.66 0.825891
Target:  5'- aGCUGUCGCCuaCauaagaGCCCgGUGCUAUCGu -3'
miRNA:   3'- gUGACGGCGGcgG------CGGG-UAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 56573 0.75 0.373481
Target:  5'- ---cGCCGCCGCCGCCCGauccACCuUUGg -3'
miRNA:   3'- gugaCGGCGGCGGCGGGUa---UGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 56665 0.66 0.856665
Target:  5'- uCACcGCCGCCGCCaccgcuGCUCAUuuuCCG-CGu -3'
miRNA:   3'- -GUGaCGGCGGCGG------CGGGUAu--GGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 56852 0.68 0.748096
Target:  5'- gGCUGCCGCuaccacCGCCGCC---GCCAcgCGa -3'
miRNA:   3'- gUGACGGCG------GCGGCGGguaUGGUa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.