miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 234664 0.68 0.748096
Target:  5'- gCGCuUGCUGgCGCCGCCUugggGCCGUg- -3'
miRNA:   3'- -GUG-ACGGCgGCGGCGGGua--UGGUAgc -5'
29721 3' -59.9 NC_006273.1 + 234459 0.66 0.84162
Target:  5'- ---cGCCGUCGCCGCCCcgAaaagCGa -3'
miRNA:   3'- gugaCGGCGGCGGCGGGuaUgguaGC- -5'
29721 3' -59.9 NC_006273.1 + 234135 0.67 0.774243
Target:  5'- gCGCUGCgaccacuugcgcaUGgCGCgGCCCGUGCUGUUGg -3'
miRNA:   3'- -GUGACG-------------GCgGCGgCGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 233581 0.66 0.856665
Target:  5'- aGCUcCUGCCaCgCGCCCAgcagcACCAUCGg -3'
miRNA:   3'- gUGAcGGCGGcG-GCGGGUa----UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 233221 0.83 0.117562
Target:  5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3'
miRNA:   3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 233167 0.7 0.595085
Target:  5'- ---cGCCGCCGgacCCGCCaucGCCGUCGg -3'
miRNA:   3'- gugaCGGCGGC---GGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 233060 0.66 0.833051
Target:  5'- aGCU-CCGCCGCCagcggguacacguGCCCGU-CCAgCGg -3'
miRNA:   3'- gUGAcGGCGGCGG-------------CGGGUAuGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 230815 0.7 0.643535
Target:  5'- cCGCUGCCGUCGCCaCCgCGUuauCCGUUc -3'
miRNA:   3'- -GUGACGGCGGCGGcGG-GUAu--GGUAGc -5'
29721 3' -59.9 NC_006273.1 + 227698 1.09 0.002151
Target:  5'- cCACUGCCGCCGCCGCCCAUACCAUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGCGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 227496 0.66 0.856665
Target:  5'- gACaGuCCGCCGCCa-CCGUACCAgcuUCGu -3'
miRNA:   3'- gUGaC-GGCGGCGGcgGGUAUGGU---AGC- -5'
29721 3' -59.9 NC_006273.1 + 227221 0.66 0.856665
Target:  5'- aGCUGCCGUaCGUgaUGCCuCAcgGCCAUCu -3'
miRNA:   3'- gUGACGGCG-GCG--GCGG-GUa-UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 227111 0.66 0.849231
Target:  5'- cCACgGCggcguggguaugCGCCGCUGCCC-UACCGgcucUCGu -3'
miRNA:   3'- -GUGaCG------------GCGGCGGCGGGuAUGGU----AGC- -5'
29721 3' -59.9 NC_006273.1 + 219936 0.67 0.792589
Target:  5'- uGCUGCUGCagaauaCGCCGCUCGcGCUcgCGu -3'
miRNA:   3'- gUGACGGCG------GCGGCGGGUaUGGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 219737 0.69 0.691774
Target:  5'- gCAgUGCaGCCGCgGgCCCGUAUCGUCc -3'
miRNA:   3'- -GUgACGgCGGCGgC-GGGUAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 216180 0.67 0.809529
Target:  5'- uCGCUGCUaUCGCCGCCCGguaauUCGa -3'
miRNA:   3'- -GUGACGGcGGCGGCGGGUaugguAGC- -5'
29721 3' -59.9 NC_006273.1 + 213835 0.69 0.662905
Target:  5'- cCGCUGCgccgCGCCGCCGUCCucgaaacGCCAgCGc -3'
miRNA:   3'- -GUGACG----GCGGCGGCGGGua-----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 213248 0.67 0.766223
Target:  5'- gACgGCCGCCGCCGCU---ACCGc-- -3'
miRNA:   3'- gUGaCGGCGGCGGCGGguaUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 204717 0.7 0.633834
Target:  5'- cCGCggccgGCCGCaggaaGCCGCCCG-GCgCGUCGu -3'
miRNA:   3'- -GUGa----CGGCGg----CGGCGGGUaUG-GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 204600 0.73 0.464714
Target:  5'- cUACcGCCGCUGCUGCUguUAUCGUCGc -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGguAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 203459 0.66 0.84162
Target:  5'- cUACUGCUGCCGCCGgugucaCCgAUAauagguCUGUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGC------GGgUAU------GGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.