miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 202112 0.74 0.404427
Target:  5'- cCGCUGCCGCCGCaagGCCCcgcUggaacucggacccGCCGUCGu -3'
miRNA:   3'- -GUGACGGCGGCGg--CGGGu--A-------------UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 201963 0.7 0.633834
Target:  5'- gGCUGUCGCgCGCCGCCgAcGCCcgaggCGg -3'
miRNA:   3'- gUGACGGCG-GCGGCGGgUaUGGua---GC- -5'
29721 3' -59.9 NC_006273.1 + 201147 0.72 0.48253
Target:  5'- cCGCUGCCuGCCgGCgGCCCuGUGCCG-CGg -3'
miRNA:   3'- -GUGACGG-CGG-CGgCGGG-UAUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 199500 0.67 0.809529
Target:  5'- uGCUgGCCGCCGCUGCacggcaUCAUGCUGggCGa -3'
miRNA:   3'- gUGA-CGGCGGCGGCG------GGUAUGGUa-GC- -5'
29721 3' -59.9 NC_006273.1 + 198660 0.7 0.643535
Target:  5'- gCugUGCCGCCGCucgcgCGCCUccGCUcgCGg -3'
miRNA:   3'- -GugACGGCGGCG-----GCGGGuaUGGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 197318 0.66 0.856665
Target:  5'- gCGCgGCgGCUGCUGCCCGagcuggACCG-CGa -3'
miRNA:   3'- -GUGaCGgCGGCGGCGGGUa-----UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 196177 0.72 0.509852
Target:  5'- gCAC-GCUGCUGCCGCUCGgacgGCCGUaCGg -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGGUa---UGGUA-GC- -5'
29721 3' -59.9 NC_006273.1 + 194705 0.72 0.491561
Target:  5'- -cCUGCCacaucGCCGCUGUCCAUGCUuUCGu -3'
miRNA:   3'- guGACGG-----CGGCGGCGGGUAUGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 194521 0.66 0.84162
Target:  5'- ---cGCCGUCGCCGCCCcgAaaagCGa -3'
miRNA:   3'- gugaCGGCGGCGGCGGGuaUgguaGC- -5'
29721 3' -59.9 NC_006273.1 + 193868 0.66 0.849231
Target:  5'- uGCUGgCGCCGgCGCU---GCCAUCc -3'
miRNA:   3'- gUGACgGCGGCgGCGGguaUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 193162 0.74 0.381261
Target:  5'- gCACcgGCCGCCgaagcccacGCUGCCCGUucggcgGCCGUCGg -3'
miRNA:   3'- -GUGa-CGGCGG---------CGGCGGGUA------UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 191487 0.73 0.43865
Target:  5'- gGC-GCCGCCGCCGCUUggACCuUCGu -3'
miRNA:   3'- gUGaCGGCGGCGGCGGGuaUGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 190937 0.67 0.809529
Target:  5'- aCGCUaGcCCGUCGCCGCCUcggggcacgGUGCCcUCc -3'
miRNA:   3'- -GUGA-C-GGCGGCGGCGGG---------UAUGGuAGc -5'
29721 3' -59.9 NC_006273.1 + 190903 0.67 0.775129
Target:  5'- ----aCCGCCGCuCGCCCGUugUcgCGc -3'
miRNA:   3'- gugacGGCGGCG-GCGGGUAugGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 190749 0.67 0.78392
Target:  5'- cCACcaGCUGCCGCCGaaCGUACCAc-- -3'
miRNA:   3'- -GUGa-CGGCGGCGGCggGUAUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 190582 0.7 0.604751
Target:  5'- gGCUGCCgagucacguccGCCGgCGCCCAUcgGCCGcgCGa -3'
miRNA:   3'- gUGACGG-----------CGGCgGCGGGUA--UGGUa-GC- -5'
29721 3' -59.9 NC_006273.1 + 187140 0.66 0.84162
Target:  5'- uCGCUGCCGuaGCUaguGCUcggCAUGCUGUCGg -3'
miRNA:   3'- -GUGACGGCggCGG---CGG---GUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 186021 0.68 0.729604
Target:  5'- gCACUaCCGCCGCUGCCguUuuuugcGCCGUgCGg -3'
miRNA:   3'- -GUGAcGGCGGCGGCGGguA------UGGUA-GC- -5'
29721 3' -59.9 NC_006273.1 + 183805 0.79 0.204988
Target:  5'- cCGCUGCCGCCGCCaCCCcu-CCGUCc -3'
miRNA:   3'- -GUGACGGCGGCGGcGGGuauGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 183757 0.72 0.519104
Target:  5'- uGCUGuCCG-CGCCGCCgAgccUGCCGUCGc -3'
miRNA:   3'- gUGAC-GGCgGCGGCGGgU---AUGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.