miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 32826 0.72 0.500669
Target:  5'- aCGCUGCCGUCgGCCGCCaCGccgGCCA-CGc -3'
miRNA:   3'- -GUGACGGCGG-CGGCGG-GUa--UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 89772 0.73 0.43015
Target:  5'- cCACca-CGaCCGCCGCCCAgACCGUCGc -3'
miRNA:   3'- -GUGacgGC-GGCGGCGGGUaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 137185 0.73 0.43015
Target:  5'- uGCcGCCGCUGCCGCUCAgcgaGCuCGUCGc -3'
miRNA:   3'- gUGaCGGCGGCGGCGGGUa---UG-GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 178478 0.73 0.43865
Target:  5'- uGCUGCCGCCacuGUCGUCCGUGUCGUCc -3'
miRNA:   3'- gUGACGGCGG---CGGCGGGUAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 163919 0.73 0.43865
Target:  5'- gGCUGCgauCGCCGCCGCCUcgAUCG-CGg -3'
miRNA:   3'- gUGACG---GCGGCGGCGGGuaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 191487 0.73 0.43865
Target:  5'- gGC-GCCGCCGCCGCUUggACCuUCGu -3'
miRNA:   3'- gUGaCGGCGGCGGCGGGuaUGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 154996 0.73 0.455935
Target:  5'- gCGCcGCUGCCGCCGCCacgGCCGcCGc -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGguaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 90728 0.72 0.491561
Target:  5'- aACUGCCGCaaCGCCGCCUcgAUCAgcacacgCGg -3'
miRNA:   3'- gUGACGGCG--GCGGCGGGuaUGGUa------GC- -5'
29721 3' -59.9 NC_006273.1 + 141775 0.72 0.491561
Target:  5'- aGCUGCgcagGCCGCCGCUCAaGCCG-CGg -3'
miRNA:   3'- gUGACGg---CGGCGGCGGGUaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 75261 0.74 0.421746
Target:  5'- gCGCUgGCCGCCgcggcgGCCGCCuCAUACCAg-- -3'
miRNA:   3'- -GUGA-CGGCGG------CGGCGG-GUAUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 163642 0.74 0.413443
Target:  5'- cCACUGCCGCCGCCaccaccaccGCCgGgcgaCGUCGg -3'
miRNA:   3'- -GUGACGGCGGCGG---------CGGgUaug-GUAGC- -5'
29721 3' -59.9 NC_006273.1 + 38383 0.74 0.413443
Target:  5'- uGCUGuuaCCGCCGCCGUCCGUcGCCGcCGc -3'
miRNA:   3'- gUGAC---GGCGGCGGCGGGUA-UGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 85958 0.81 0.150249
Target:  5'- ---gGCCGUCGCCcCCCGUGCCAUCGg -3'
miRNA:   3'- gugaCGGCGGCGGcGGGUAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 85766 0.8 0.186517
Target:  5'- uCGCUGCCGUCGCCGUCC-UGCCcauUCGc -3'
miRNA:   3'- -GUGACGGCGGCGGCGGGuAUGGu--AGC- -5'
29721 3' -59.9 NC_006273.1 + 65643 0.77 0.282408
Target:  5'- aCGCUGCCGCCGuuGCCU--GCCAa-- -3'
miRNA:   3'- -GUGACGGCGGCggCGGGuaUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 73602 0.77 0.282408
Target:  5'- cCGCUGCCGCUGCCGCCUuc-CCuUCu -3'
miRNA:   3'- -GUGACGGCGGCGGCGGGuauGGuAGc -5'
29721 3' -59.9 NC_006273.1 + 141810 0.77 0.288744
Target:  5'- cCGCgcagGCCGCCGCCGCUCAaguUGCCcaggcucacGUCGa -3'
miRNA:   3'- -GUGa---CGGCGGCGGCGGGU---AUGG---------UAGC- -5'
29721 3' -59.9 NC_006273.1 + 118403 0.75 0.343453
Target:  5'- aGCcGCCGCUGCUGCCCAaGCCGcCGc -3'
miRNA:   3'- gUGaCGGCGGCGGCGGGUaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 56573 0.75 0.373481
Target:  5'- ---cGCCGCCGCCGCCCGauccACCuUUGg -3'
miRNA:   3'- gugaCGGCGGCGGCGGGUa---UGGuAGC- -5'
29721 3' -59.9 NC_006273.1 + 78421 0.74 0.389149
Target:  5'- ---cGCCGCCGUcagcgucguCGUCCGUGCCAUCa -3'
miRNA:   3'- gugaCGGCGGCG---------GCGGGUAUGGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.