Results 41 - 60 of 197 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 141810 | 0.77 | 0.288744 |
Target: 5'- cCGCgcagGCCGCCGCCGCUCAaguUGCCcaggcucacGUCGa -3' miRNA: 3'- -GUGa---CGGCGGCGGCGGGU---AUGG---------UAGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 73602 | 0.77 | 0.282408 |
Target: 5'- cCGCUGCCGCUGCCGCCUuc-CCuUCu -3' miRNA: 3'- -GUGACGGCGGCGGCGGGuauGGuAGc -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 65643 | 0.77 | 0.282408 |
Target: 5'- aCGCUGCCGCCGuuGCCU--GCCAa-- -3' miRNA: 3'- -GUGACGGCGGCggCGGGuaUGGUagc -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 85766 | 0.8 | 0.186517 |
Target: 5'- uCGCUGCCGUCGCCGUCC-UGCCcauUCGc -3' miRNA: 3'- -GUGACGGCGGCGGCGGGuAUGGu--AGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 85958 | 0.81 | 0.150249 |
Target: 5'- ---gGCCGUCGCCcCCCGUGCCAUCGg -3' miRNA: 3'- gugaCGGCGGCGGcGGGUAUGGUAGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 178478 | 0.73 | 0.43865 |
Target: 5'- uGCUGCCGCCacuGUCGUCCGUGUCGUCc -3' miRNA: 3'- gUGACGGCGG---CGGCGGGUAUGGUAGc -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 163919 | 0.73 | 0.43865 |
Target: 5'- gGCUGCgauCGCCGCCGCCUcgAUCG-CGg -3' miRNA: 3'- gUGACG---GCGGCGGCGGGuaUGGUaGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 21221 | 0.71 | 0.566257 |
Target: 5'- gGCUGCCGCCGCUGUggcugCCGcUGCUgAUCGc -3' miRNA: 3'- gUGACGGCGGCGGCG-----GGU-AUGG-UAGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 140247 | 0.71 | 0.556723 |
Target: 5'- uCGCgGCCGCgGCUgaGCCUuUGCCGUCGc -3' miRNA: 3'- -GUGaCGGCGgCGG--CGGGuAUGGUAGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 34074 | 0.71 | 0.5378 |
Target: 5'- ---cGCCGCCGCCGUaguUACCGUUGu -3' miRNA: 3'- gugaCGGCGGCGGCGgguAUGGUAGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 87815 | 0.72 | 0.519104 |
Target: 5'- cCGCUGCC-CCGCCGCCCccGCUg--- -3' miRNA: 3'- -GUGACGGcGGCGGCGGGuaUGGuagc -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 83991 | 0.72 | 0.519104 |
Target: 5'- uGCUGCCGCgGCUGUgCCAUugauccuugACCGUCa -3' miRNA: 3'- gUGACGGCGgCGGCG-GGUA---------UGGUAGc -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 45404 | 0.72 | 0.519104 |
Target: 5'- cCGCUGCCGCCuGCaGCCCAgucuCCG-CGa -3' miRNA: 3'- -GUGACGGCGG-CGgCGGGUau--GGUaGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 196177 | 0.72 | 0.509852 |
Target: 5'- gCAC-GCUGCUGCCGCUCGgacgGCCGUaCGg -3' miRNA: 3'- -GUGaCGGCGGCGGCGGGUa---UGGUA-GC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 145130 | 0.72 | 0.500669 |
Target: 5'- gGCgauUCGCCGCCGCCgAUACCuuUCGa -3' miRNA: 3'- gUGac-GGCGGCGGCGGgUAUGGu-AGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 32826 | 0.72 | 0.500669 |
Target: 5'- aCGCUGCCGUCgGCCGCCaCGccgGCCA-CGc -3' miRNA: 3'- -GUGACGGCGG-CGGCGG-GUa--UGGUaGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 141775 | 0.72 | 0.491561 |
Target: 5'- aGCUGCgcagGCCGCCGCUCAaGCCG-CGg -3' miRNA: 3'- gUGACGg---CGGCGGCGGGUaUGGUaGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 90728 | 0.72 | 0.491561 |
Target: 5'- aACUGCCGCaaCGCCGCCUcgAUCAgcacacgCGg -3' miRNA: 3'- gUGACGGCG--GCGGCGGGuaUGGUa------GC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 154996 | 0.73 | 0.455935 |
Target: 5'- gCGCcGCUGCCGCCGCCacgGCCGcCGc -3' miRNA: 3'- -GUGaCGGCGGCGGCGGguaUGGUaGC- -5' |
|||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 191487 | 0.73 | 0.43865 |
Target: 5'- gGC-GCCGCCGCCGCUUggACCuUCGu -3' miRNA: 3'- gUGaCGGCGGCGGCGGGuaUGGuAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home