Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29721 | 3' | -59.9 | NC_006273.1 | + | 227698 | 1.09 | 0.002151 |
Target: 5'- cCACUGCCGCCGCCGCCCAUACCAUCGg -3' miRNA: 3'- -GUGACGGCGGCGGCGGGUAUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 135879 | 0.73 | 0.447246 |
Target: 5'- aGCaGCCGCCGCCGCC---ACCAcCGg -3' miRNA: 3'- gUGaCGGCGGCGGCGGguaUGGUaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 72614 | 0.73 | 0.47358 |
Target: 5'- cCGCUGCCGCCGCCaccaccaccGCCagcACCAcCGg -3' miRNA: 3'- -GUGACGGCGGCGG---------CGGguaUGGUaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 145962 | 0.66 | 0.856665 |
Target: 5'- cCGCUGCUgGCCuaCGCCUAUuucagauCCGUCu -3' miRNA: 3'- -GUGACGG-CGGcgGCGGGUAu------GGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 17192 | 0.81 | 0.153938 |
Target: 5'- cCGCcGUCgGCCGCCGCCCAUGCCAcgCGa -3' miRNA: 3'- -GUGaCGG-CGGCGGCGGGUAUGGUa-GC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 119982 | 0.81 | 0.161175 |
Target: 5'- cCGCUGCCguacagcGCCGCCGCUCAUaauGCCGUCa -3' miRNA: 3'- -GUGACGG-------CGGCGGCGGGUA---UGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 68881 | 0.78 | 0.23565 |
Target: 5'- cCACcGCUGCCGCCGCCaCGacaaacacUACCGUCGc -3' miRNA: 3'- -GUGaCGGCGGCGGCGG-GU--------AUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 72670 | 0.78 | 0.241119 |
Target: 5'- -cUUGCCGCCGCCGCCaugGCCuUCGu -3' miRNA: 3'- guGACGGCGGCGGCGGguaUGGuAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 170277 | 0.77 | 0.282409 |
Target: 5'- aGCUGCaCGCCGaaGCCCGUgagcACCAUCa -3' miRNA: 3'- gUGACG-GCGGCggCGGGUA----UGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 202112 | 0.74 | 0.404427 |
Target: 5'- cCGCUGCCGCCGCaagGCCCcgcUggaacucggacccGCCGUCGu -3' miRNA: 3'- -GUGACGGCGGCGg--CGGGu--A-------------UGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 90951 | 0.74 | 0.381261 |
Target: 5'- uGCgaGCCGCCGCCaCCCGaACCGUCc -3' miRNA: 3'- gUGa-CGGCGGCGGcGGGUaUGGUAGc -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 135544 | 0.77 | 0.282409 |
Target: 5'- uCGCcGCCGCCGCuccuccCGCCCAgccACCGUCGc -3' miRNA: 3'- -GUGaCGGCGGCG------GCGGGUa--UGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 38328 | 0.83 | 0.117562 |
Target: 5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3' miRNA: 3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 193162 | 0.74 | 0.381261 |
Target: 5'- gCACcgGCCGCCgaagcccacGCUGCCCGUucggcgGCCGUCGg -3' miRNA: 3'- -GUGa-CGGCGG---------CGGCGGGUA------UGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 171132 | 0.82 | 0.139659 |
Target: 5'- gGCcGCCGCCGCaaCGCCCGUGCCcgCGg -3' miRNA: 3'- gUGaCGGCGGCG--GCGGGUAUGGuaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 83395 | 0.78 | 0.252376 |
Target: 5'- uGCUGCCGCCGCCaCCCGgcCCggCGg -3' miRNA: 3'- gUGACGGCGGCGGcGGGUauGGuaGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 95806 | 0.74 | 0.397143 |
Target: 5'- -uCUGCCGCUGCCGCCUAaccuCCGcUCGc -3' miRNA: 3'- guGACGGCGGCGGCGGGUau--GGU-AGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 204600 | 0.73 | 0.464714 |
Target: 5'- cUACcGCCGCUGCUGCUguUAUCGUCGc -3' miRNA: 3'- -GUGaCGGCGGCGGCGGguAUGGUAGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 41575 | 0.81 | 0.14664 |
Target: 5'- gCGCUGUCGCCGCCGCgCCAUAgCCuccUCGg -3' miRNA: 3'- -GUGACGGCGGCGGCG-GGUAU-GGu--AGC- -5' |
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29721 | 3' | -59.9 | NC_006273.1 | + | 183805 | 0.79 | 0.204988 |
Target: 5'- cCGCUGCCGCCGCCaCCCcu-CCGUCc -3' miRNA: 3'- -GUGACGGCGGCGGcGGGuauGGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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