miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 3' -59.9 NC_006273.1 + 181468 0.72 0.50067
Target:  5'- gUACUGCUGCCGCCagaccUCCAgcaacACCGUCGu -3'
miRNA:   3'- -GUGACGGCGGCGGc----GGGUa----UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 72614 0.73 0.47358
Target:  5'- cCGCUGCCGCCGCCaccaccaccGCCagcACCAcCGg -3'
miRNA:   3'- -GUGACGGCGGCGG---------CGGguaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 135544 0.77 0.282409
Target:  5'- uCGCcGCCGCCGCuccuccCGCCCAgccACCGUCGc -3'
miRNA:   3'- -GUGaCGGCGGCG------GCGGGUa--UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 41575 0.81 0.14664
Target:  5'- gCGCUGUCGCCGCCGCgCCAUAgCCuccUCGg -3'
miRNA:   3'- -GUGACGGCGGCGGCG-GGUAU-GGu--AGC- -5'
29721 3' -59.9 NC_006273.1 + 180283 0.71 0.585443
Target:  5'- ---aGCCGCggaCGCCGUCgGUACCGUCu -3'
miRNA:   3'- gugaCGGCG---GCGGCGGgUAUGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 183757 0.72 0.519104
Target:  5'- uGCUGuCCG-CGCCGCCgAgccUGCCGUCGc -3'
miRNA:   3'- gUGAC-GGCgGCGGCGGgU---AUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 135879 0.73 0.447246
Target:  5'- aGCaGCCGCCGCCGCC---ACCAcCGg -3'
miRNA:   3'- gUGaCGGCGGCGGCGGguaUGGUaGC- -5'
29721 3' -59.9 NC_006273.1 + 171132 0.82 0.139659
Target:  5'- gGCcGCCGCCGCaaCGCCCGUGCCcgCGg -3'
miRNA:   3'- gUGaCGGCGGCG--GCGGGUAUGGuaGC- -5'
29721 3' -59.9 NC_006273.1 + 41923 0.72 0.519104
Target:  5'- gACuUGCCGUCGCUGUCCGUggaACUAUCu -3'
miRNA:   3'- gUG-ACGGCGGCGGCGGGUA---UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 38328 0.83 0.117562
Target:  5'- uGCUGCCGCUGCCGCC---GCCGUCGc -3'
miRNA:   3'- gUGACGGCGGCGGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 204600 0.73 0.464714
Target:  5'- cUACcGCCGCUGCUGCUguUAUCGUCGc -3'
miRNA:   3'- -GUGaCGGCGGCGGCGGguAUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 86610 0.72 0.50067
Target:  5'- gCACggcGCCGCCGCCGgCCUcgGUACCGa-- -3'
miRNA:   3'- -GUGa--CGGCGGCGGC-GGG--UAUGGUagc -5'
29721 3' -59.9 NC_006273.1 + 193162 0.74 0.381261
Target:  5'- gCACcgGCCGCCgaagcccacGCUGCCCGUucggcgGCCGUCGg -3'
miRNA:   3'- -GUGa-CGGCGG---------CGGCGGGUA------UGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 170277 0.77 0.282409
Target:  5'- aGCUGCaCGCCGaaGCCCGUgagcACCAUCa -3'
miRNA:   3'- gUGACG-GCGGCggCGGGUA----UGGUAGc -5'
29721 3' -59.9 NC_006273.1 + 68881 0.78 0.23565
Target:  5'- cCACcGCUGCCGCCGCCaCGacaaacacUACCGUCGc -3'
miRNA:   3'- -GUGaCGGCGGCGGCGG-GU--------AUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 17192 0.81 0.153938
Target:  5'- cCGCcGUCgGCCGCCGCCCAUGCCAcgCGa -3'
miRNA:   3'- -GUGaCGG-CGGCGGCGGGUAUGGUa-GC- -5'
29721 3' -59.9 NC_006273.1 + 173540 0.7 0.633834
Target:  5'- aGCggGUCGCgCGCCGUCUGUACCGUgGc -3'
miRNA:   3'- gUGa-CGGCG-GCGGCGGGUAUGGUAgC- -5'
29721 3' -59.9 NC_006273.1 + 38274 0.7 0.595085
Target:  5'- ---cGCCGCCGgacCCGCCaucGCCGUCGg -3'
miRNA:   3'- gugaCGGCGGC---GGCGGguaUGGUAGC- -5'
29721 3' -59.9 NC_006273.1 + 74576 0.71 0.565302
Target:  5'- aGCaUGCCGCCccaauccGCCGCCCAacUGCgCGUCc -3'
miRNA:   3'- gUG-ACGGCGG-------CGGCGGGU--AUG-GUAGc -5'
29721 3' -59.9 NC_006273.1 + 72318 0.71 0.5378
Target:  5'- cCGCcGUCGCCGCCGCCuCGgacuccugcACCGUCu -3'
miRNA:   3'- -GUGaCGGCGGCGGCGG-GUa--------UGGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.