miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 180449 0.66 0.998636
Target:  5'- cCUGAC-GAUUGCAGCUuUCgcUCGCUg -3'
miRNA:   3'- cGGCUGuUUAGCGUCGAcAGa-AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 178499 0.66 0.998636
Target:  5'- uGUCGuccaACAGGUUGaCGGCU-UCUUCGUCg -3'
miRNA:   3'- -CGGC----UGUUUAGC-GUCGAcAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 1689 0.66 0.998636
Target:  5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3'
miRNA:   3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 16753 0.66 0.998636
Target:  5'- aUCGuCAAGUCGCAcCUGgaccgCU-CGCCg -3'
miRNA:   3'- cGGCuGUUUAGCGUcGACa----GAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 88144 0.66 0.998636
Target:  5'- cGCCGuguuCA---UGCAGCUcGUCUUUuuaGCCg -3'
miRNA:   3'- -CGGCu---GUuuaGCGUCGA-CAGAAG---CGG- -5'
29721 5' -51.3 NC_006273.1 + 20420 0.66 0.998636
Target:  5'- aCUGACGGuccgcUgGCAGCUGUUc-CGCCu -3'
miRNA:   3'- cGGCUGUUu----AgCGUCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 196582 0.66 0.998636
Target:  5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3'
miRNA:   3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 96382 0.66 0.998636
Target:  5'- uGCUGGCcAAUCGCGuGCUGcaguaccucaUCcaCGCCu -3'
miRNA:   3'- -CGGCUGuUUAGCGU-CGAC----------AGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 59449 0.66 0.99861
Target:  5'- cGCCGACuaaauucauGUCGCGcgauaguGgUGUUUaUCGCCg -3'
miRNA:   3'- -CGGCUGuu-------UAGCGU-------CgACAGA-AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 157121 0.66 0.998478
Target:  5'- cGCCGACAAGUacuuugaGCagguucucaaGGCUGUaaccaacgugcugUCGCCc -3'
miRNA:   3'- -CGGCUGUUUAg------CG----------UCGACAga-----------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 164589 0.66 0.998365
Target:  5'- cGCUGGCGcugccGUCGCAGUacggGUCcUgGCCc -3'
miRNA:   3'- -CGGCUGUu----UAGCGUCGa---CAGaAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 147870 0.66 0.998365
Target:  5'- cGCCGGCugaggUGCGuGCUGUgcaucgCGCCa -3'
miRNA:   3'- -CGGCUGuuua-GCGU-CGACAgaa---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 30815 0.66 0.998365
Target:  5'- -gCGACGAGUCGUcuGC-GUCcUCGUCg -3'
miRNA:   3'- cgGCUGUUUAGCGu-CGaCAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 42769 0.66 0.998365
Target:  5'- cGCCG-CGAGUCGCAuuCUG-CacCGCCg -3'
miRNA:   3'- -CGGCuGUUUAGCGUc-GACaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 147538 0.66 0.998365
Target:  5'- cGCCGGCGAAgaCGaGGCUGgCggCGUCg -3'
miRNA:   3'- -CGGCUGUUUa-GCgUCGACaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 173256 0.66 0.998365
Target:  5'- cCCGGCGGAccaGCGGCUG-CUg-GCCc -3'
miRNA:   3'- cGGCUGUUUag-CGUCGACaGAagCGG- -5'
29721 5' -51.3 NC_006273.1 + 41564 0.66 0.998365
Target:  5'- cGCC-ACAGcaUGC-GCUGUCgcCGCCg -3'
miRNA:   3'- -CGGcUGUUuaGCGuCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 68240 0.66 0.998051
Target:  5'- cGCCGACuuccaGCGGCccGUCUUcaaaaCGCUg -3'
miRNA:   3'- -CGGCUGuuuagCGUCGa-CAGAA-----GCGG- -5'
29721 5' -51.3 NC_006273.1 + 171059 0.66 0.998051
Target:  5'- uGCgGA---GUCGCGGCgGUUggggCGCCg -3'
miRNA:   3'- -CGgCUguuUAGCGUCGaCAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 231720 0.66 0.997802
Target:  5'- cGUCGGCAugccgcuGAUCGCAGUggccccaccucggcaUGcCggCGCCg -3'
miRNA:   3'- -CGGCUGU-------UUAGCGUCG---------------ACaGaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.