miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 1737 0.66 0.997687
Target:  5'- gGCCGACAg--CGCaAGCgacuUCgaCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGCG-UCGac--AGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 196582 0.66 0.998636
Target:  5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3'
miRNA:   3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 16753 0.66 0.998636
Target:  5'- aUCGuCAAGUCGCAcCUGgaccgCU-CGCCg -3'
miRNA:   3'- cGGCuGUUUAGCGUcGACa----GAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 233724 0.66 0.997268
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 20420 0.66 0.998636
Target:  5'- aCUGACGGuccgcUgGCAGCUGUUc-CGCCu -3'
miRNA:   3'- cGGCUGUUu----AgCGUCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 164589 0.66 0.998365
Target:  5'- cGCUGGCGcugccGUCGCAGUacggGUCcUgGCCc -3'
miRNA:   3'- -CGGCUGUu----UAGCGUCGa---CAGaAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 186508 0.66 0.997268
Target:  5'- -gCGGCAAGUagCGCgAGCUGUgg-CGCCc -3'
miRNA:   3'- cgGCUGUUUA--GCG-UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 6493 0.66 0.997268
Target:  5'- uCCGGCugcUCGCAGUUGggCUccUCGUCc -3'
miRNA:   3'- cGGCUGuuuAGCGUCGACa-GA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 147870 0.66 0.998365
Target:  5'- cGCCGGCugaggUGCGuGCUGUgcaucgCGCCa -3'
miRNA:   3'- -CGGCUGuuua-GCGU-CGACAgaa---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 102128 0.66 0.997687
Target:  5'- uGUCGG-AAAUCGCAGCggcaguggCgccgUCGCCa -3'
miRNA:   3'- -CGGCUgUUUAGCGUCGaca-----Ga---AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 198088 0.66 0.997687
Target:  5'- uGCCGGCAuguccggccGUCGCaagGGCUGcUCggCgGCCa -3'
miRNA:   3'- -CGGCUGUu--------UAGCG---UCGAC-AGaaG-CGG- -5'
29721 5' -51.3 NC_006273.1 + 68240 0.66 0.998051
Target:  5'- cGCCGACuuccaGCGGCccGUCUUcaaaaCGCUg -3'
miRNA:   3'- -CGGCUGuuuagCGUCGa-CAGAA-----GCGG- -5'
29721 5' -51.3 NC_006273.1 + 199472 0.66 0.997687
Target:  5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3'
miRNA:   3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 28904 0.66 0.997687
Target:  5'- cGCCgGAUAAcGagGCAGCgGUCUUUggGCCa -3'
miRNA:   3'- -CGG-CUGUU-UagCGUCGaCAGAAG--CGG- -5'
29721 5' -51.3 NC_006273.1 + 162821 0.66 0.997687
Target:  5'- cGCCG-CAGcugcggggccucAUCGCAGCcuugcGUCggcaCGCCg -3'
miRNA:   3'- -CGGCuGUU------------UAGCGUCGa----CAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 178499 0.66 0.998636
Target:  5'- uGUCGuccaACAGGUUGaCGGCU-UCUUCGUCg -3'
miRNA:   3'- -CGGC----UGUUUAGC-GUCGAcAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 180449 0.66 0.998636
Target:  5'- cCUGAC-GAUUGCAGCUuUCgcUCGCUg -3'
miRNA:   3'- cGGCUGuUUAGCGUCGAcAGa-AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 199007 0.66 0.997687
Target:  5'- gGCagGAUAAGUuggUGCGGCUGUCgcgCGaCCu -3'
miRNA:   3'- -CGg-CUGUUUA---GCGUCGACAGaa-GC-GG- -5'
29721 5' -51.3 NC_006273.1 + 133520 0.66 0.997268
Target:  5'- aGCCGACua--CGCuGaaacGUUUUCGCCu -3'
miRNA:   3'- -CGGCUGuuuaGCGuCga--CAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 38832 0.66 0.997268
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.