miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 199007 0.66 0.997687
Target:  5'- gGCagGAUAAGUuggUGCGGCUGUCgcgCGaCCu -3'
miRNA:   3'- -CGg-CUGUUUA---GCGUCGACAGaa-GC-GG- -5'
29721 5' -51.3 NC_006273.1 + 16753 0.66 0.998636
Target:  5'- aUCGuCAAGUCGCAcCUGgaccgCU-CGCCg -3'
miRNA:   3'- cGGCuGUUUAGCGUcGACa----GAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 20420 0.66 0.998636
Target:  5'- aCUGACGGuccgcUgGCAGCUGUUc-CGCCu -3'
miRNA:   3'- cGGCUGUUu----AgCGUCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 38832 0.66 0.997268
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 178499 0.66 0.998636
Target:  5'- uGUCGuccaACAGGUUGaCGGCU-UCUUCGUCg -3'
miRNA:   3'- -CGGC----UGUUUAGC-GUCGAcAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 147538 0.66 0.998365
Target:  5'- cGCCGGCGAAgaCGaGGCUGgCggCGUCg -3'
miRNA:   3'- -CGGCUGUUUa-GCgUCGACaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 88144 0.66 0.998636
Target:  5'- cGCCGuguuCA---UGCAGCUcGUCUUUuuaGCCg -3'
miRNA:   3'- -CGGCu---GUuuaGCGUCGA-CAGAAG---CGG- -5'
29721 5' -51.3 NC_006273.1 + 96382 0.66 0.998636
Target:  5'- uGCUGGCcAAUCGCGuGCUGcaguaccucaUCcaCGCCu -3'
miRNA:   3'- -CGGCUGuUUAGCGU-CGAC----------AGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 147870 0.66 0.998365
Target:  5'- cGCCGGCugaggUGCGuGCUGUgcaucgCGCCa -3'
miRNA:   3'- -CGGCUGuuua-GCGU-CGACAgaa---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 199472 0.66 0.997687
Target:  5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3'
miRNA:   3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 41564 0.66 0.998365
Target:  5'- cGCC-ACAGcaUGC-GCUGUCgcCGCCg -3'
miRNA:   3'- -CGGcUGUUuaGCGuCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 157121 0.66 0.998478
Target:  5'- cGCCGACAAGUacuuugaGCagguucucaaGGCUGUaaccaacgugcugUCGCCc -3'
miRNA:   3'- -CGGCUGUUUAg------CG----------UCGACAga-----------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 231720 0.66 0.997802
Target:  5'- cGUCGGCAugccgcuGAUCGCAGUggccccaccucggcaUGcCggCGCCg -3'
miRNA:   3'- -CGGCUGU-------UUAGCGUCG---------------ACaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 201891 0.67 0.994916
Target:  5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3'
miRNA:   3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5'
29721 5' -51.3 NC_006273.1 + 37644 0.67 0.994124
Target:  5'- cGCgCGGCAAAagGCAcGCUGUUgacggCGCg -3'
miRNA:   3'- -CG-GCUGUUUagCGU-CGACAGaa---GCGg -5'
29721 5' -51.3 NC_006273.1 + 130844 0.67 0.994916
Target:  5'- cCCGACGAcgagCGCgggucacaAGCUGUCacUGCCg -3'
miRNA:   3'- cGGCUGUUua--GCG--------UCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 114567 0.67 0.995485
Target:  5'- cGCCGGCGuggcgcucuaCGCGGUcGcCUUUGCCu -3'
miRNA:   3'- -CGGCUGUuua-------GCGUCGaCaGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 88599 0.67 0.995619
Target:  5'- cGCCGGCA---CGCcuGCgGUCUUCaaGCCc -3'
miRNA:   3'- -CGGCUGUuuaGCGu-CGaCAGAAG--CGG- -5'
29721 5' -51.3 NC_006273.1 + 217990 0.67 0.995619
Target:  5'- gGCCGGCGGccauacgCGCGGCaaccgcGUCUUCcCCu -3'
miRNA:   3'- -CGGCUGUUua-----GCGUCGa-----CAGAAGcGG- -5'
29721 5' -51.3 NC_006273.1 + 72294 0.67 0.996241
Target:  5'- uGCCGAUGAGgccgccgCGCAGCg--CggCGCUg -3'
miRNA:   3'- -CGGCUGUUUa------GCGUCGacaGaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.