miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 78864 0.67 0.994916
Target:  5'- cGCCcuuGACGAAcUCGCAgGCcGUCUUgCGCa -3'
miRNA:   3'- -CGG---CUGUUU-AGCGU-CGaCAGAA-GCGg -5'
29721 5' -51.3 NC_006273.1 + 175731 0.67 0.994916
Target:  5'- cGCC--CAAGUCGCcaaAGUcGUCUaUCGCCa -3'
miRNA:   3'- -CGGcuGUUUAGCG---UCGaCAGA-AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 28815 0.67 0.994916
Target:  5'- uGCCGACGAAaCGCAGCgGcUCgggGCa -3'
miRNA:   3'- -CGGCUGUUUaGCGUCGaC-AGaagCGg -5'
29721 5' -51.3 NC_006273.1 + 130844 0.67 0.994916
Target:  5'- cCCGACGAcgagCGCgggucacaAGCUGUCacUGCCg -3'
miRNA:   3'- cGGCUGUUua--GCG--------UCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 216958 0.67 0.994916
Target:  5'- aCCGuuCAuuUCGCgGGCcGUCUUgGCCa -3'
miRNA:   3'- cGGCu-GUuuAGCG-UCGaCAGAAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 202628 0.67 0.996788
Target:  5'- cGCCGACucgcugcCGCAGUUG-CUggagCGCg -3'
miRNA:   3'- -CGGCUGuuua---GCGUCGACaGAa---GCGg -5'
29721 5' -51.3 NC_006273.1 + 7135 0.67 0.994688
Target:  5'- cGCCGuauguagaagacguGCGGGUCGCGGgaGgcaCUUCGgCg -3'
miRNA:   3'- -CGGC--------------UGUUUAGCGUCgaCa--GAAGCgG- -5'
29721 5' -51.3 NC_006273.1 + 217990 0.67 0.995619
Target:  5'- gGCCGGCGGccauacgCGCGGCaaccgcGUCUUCcCCu -3'
miRNA:   3'- -CGGCUGUUua-----GCGUCGa-----CAGAAGcGG- -5'
29721 5' -51.3 NC_006273.1 + 72294 0.67 0.996241
Target:  5'- uGCCGAUGAGgccgccgCGCAGCg--CggCGCUg -3'
miRNA:   3'- -CGGCUGUUUa------GCGUCGacaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 201891 0.67 0.994916
Target:  5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3'
miRNA:   3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5'
29721 5' -51.3 NC_006273.1 + 71855 0.67 0.995619
Target:  5'- gGCCGGgGAGgaGCAGCUGgugUUUCGaCUg -3'
miRNA:   3'- -CGGCUgUUUagCGUCGACa--GAAGC-GG- -5'
29721 5' -51.3 NC_006273.1 + 230482 0.67 0.994916
Target:  5'- gGCgGGCGAAUCGgcCGGCUgGUCggUCGgCg -3'
miRNA:   3'- -CGgCUGUUUAGC--GUCGA-CAGa-AGCgG- -5'
29721 5' -51.3 NC_006273.1 + 87348 0.67 0.996469
Target:  5'- cGUCGACGAcgCGgguucugcucccgaAGCUGUUgcCGCCg -3'
miRNA:   3'- -CGGCUGUUuaGCg-------------UCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 90220 0.67 0.995553
Target:  5'- aGCCGGCcca--GCAGCucgggcgUGUUUUCGUCc -3'
miRNA:   3'- -CGGCUGuuuagCGUCG-------ACAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 93288 0.67 0.996002
Target:  5'- gGCCGAgGuuUCGCGGCagcgcaagccgugGUaaccgUCGCCg -3'
miRNA:   3'- -CGGCUgUuuAGCGUCGa------------CAga---AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 213474 0.67 0.996241
Target:  5'- uGCCGGCGgc-UGCAGUUGUUgucCGCg -3'
miRNA:   3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 201976 0.67 0.996241
Target:  5'- cGCCGACGcccGAggCGguGCgcGUCcagCGCCu -3'
miRNA:   3'- -CGGCUGU---UUa-GCguCGa-CAGaa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 45119 0.67 0.996737
Target:  5'- uGCCGAUggGUucgcuacugcagcUGCAGCUGUaagUGCa -3'
miRNA:   3'- -CGGCUGuuUA-------------GCGUCGACAgaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 71473 0.67 0.996788
Target:  5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3'
miRNA:   3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 187867 0.67 0.996788
Target:  5'- cGCCGugGGAUCgGCuucgagaucgAGCUGggcCUcgcgcggcUCGCCg -3'
miRNA:   3'- -CGGCugUUUAG-CG----------UCGACa--GA--------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.