Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 227732 | 1.15 | 0.005343 |
Target: 5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3' miRNA: 3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 203918 | 0.82 | 0.490955 |
Target: 5'- gGCCGACGAGgaggCGCAGCcaccgccucaUGgcggCUUCGCCa -3' miRNA: 3'- -CGGCUGUUUa---GCGUCG----------ACa---GAAGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 148833 | 0.79 | 0.61037 |
Target: 5'- gGCCGGCGGcgaucGUCGCuGGCUGUUgcCGCCg -3' miRNA: 3'- -CGGCUGUU-----UAGCG-UCGACAGaaGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 87842 | 0.78 | 0.651252 |
Target: 5'- cGCCGACGc--CGcCAGCcucGUCUUCGCCg -3' miRNA: 3'- -CGGCUGUuuaGC-GUCGa--CAGAAGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 166874 | 0.78 | 0.670618 |
Target: 5'- cGCCGACAGGUacgGCAGUUGUugcguggCUUUGCCc -3' miRNA: 3'- -CGGCUGUUUAg--CGUCGACA-------GAAGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 110991 | 0.77 | 0.701944 |
Target: 5'- -aCGACGAGaucgCGCGGCUGUCggCGCUu -3' miRNA: 3'- cgGCUGUUUa---GCGUCGACAGaaGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 217678 | 0.76 | 0.779516 |
Target: 5'- cGUCaGACGAAUCGCGGCUGg--UgGCCc -3' miRNA: 3'- -CGG-CUGUUUAGCGUCGACagaAgCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 233643 | 0.76 | 0.760732 |
Target: 5'- aGUCGGCGucgaAGUCGCuugcGCUGUCggcccagUCGCCa -3' miRNA: 3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 213056 | 0.75 | 0.815433 |
Target: 5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3' miRNA: 3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 70809 | 0.74 | 0.878829 |
Target: 5'- cGCgGACAAcGUCGCuGC-GUCUggCGCCg -3' miRNA: 3'- -CGgCUGUU-UAGCGuCGaCAGAa-GCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 104589 | 0.74 | 0.871611 |
Target: 5'- cGCCGGCAcgaUGCAGCUGgcccagCGCCu -3' miRNA: 3'- -CGGCUGUuuaGCGUCGACagaa--GCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 5743 | 0.73 | 0.905463 |
Target: 5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3' miRNA: 3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 183286 | 0.73 | 0.911544 |
Target: 5'- aCCGGCGccuAUUGUAGCUGUag-CGCCc -3' miRNA: 3'- cGGCUGUu--UAGCGUCGACAgaaGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 188246 | 0.73 | 0.905463 |
Target: 5'- aGCCGcaaaAUAGAUCGUggAGCaUGUCU-CGCCa -3' miRNA: 3'- -CGGC----UGUUUAGCG--UCG-ACAGAaGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 41136 | 0.73 | 0.899147 |
Target: 5'- uCCGAgGAGUCGuCGucuuccuccucGCUGUCUUCGaCCg -3' miRNA: 3'- cGGCUgUUUAGC-GU-----------CGACAGAAGC-GG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 188006 | 0.73 | 0.898503 |
Target: 5'- cGCCGGCAAccgcgucGUCGUuGCUaUCgUCGCCg -3' miRNA: 3'- -CGGCUGUU-------UAGCGuCGAcAGaAGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 57647 | 0.73 | 0.892601 |
Target: 5'- cGCaCGgaucACAGAUCGCAGCUG-CUggauaGCCg -3' miRNA: 3'- -CG-GC----UGUUUAGCGUCGACaGAag---CGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 118359 | 0.73 | 0.911544 |
Target: 5'- uGCCcaACAGGcCGUAGCUGUCUgagcgaaagggaUCGCCc -3' miRNA: 3'- -CGGc-UGUUUaGCGUCGACAGA------------AGCGG- -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 217515 | 0.72 | 0.938386 |
Target: 5'- cGCCGu--AGUCGCAGCggauagcaUCUUCGCa -3' miRNA: 3'- -CGGCuguUUAGCGUCGac------AGAAGCGg -5' |
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29721 | 5' | -51.3 | NC_006273.1 | + | 30662 | 0.72 | 0.928364 |
Target: 5'- aCCG-CAGAUCGCAGCgGgcg-CGCCu -3' miRNA: 3'- cGGCuGUUUAGCGUCGaCagaaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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