miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 227732 1.15 0.005343
Target:  5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3'
miRNA:   3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 203918 0.82 0.490955
Target:  5'- gGCCGACGAGgaggCGCAGCcaccgccucaUGgcggCUUCGCCa -3'
miRNA:   3'- -CGGCUGUUUa---GCGUCG----------ACa---GAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 148833 0.79 0.61037
Target:  5'- gGCCGGCGGcgaucGUCGCuGGCUGUUgcCGCCg -3'
miRNA:   3'- -CGGCUGUU-----UAGCG-UCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 87842 0.78 0.651252
Target:  5'- cGCCGACGc--CGcCAGCcucGUCUUCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGC-GUCGa--CAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 166874 0.78 0.670618
Target:  5'- cGCCGACAGGUacgGCAGUUGUugcguggCUUUGCCc -3'
miRNA:   3'- -CGGCUGUUUAg--CGUCGACA-------GAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 110991 0.77 0.701944
Target:  5'- -aCGACGAGaucgCGCGGCUGUCggCGCUu -3'
miRNA:   3'- cgGCUGUUUa---GCGUCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 233643 0.76 0.760732
Target:  5'- aGUCGGCGucgaAGUCGCuugcGCUGUCggcccagUCGCCa -3'
miRNA:   3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 217678 0.76 0.779516
Target:  5'- cGUCaGACGAAUCGCGGCUGg--UgGCCc -3'
miRNA:   3'- -CGG-CUGUUUAGCGUCGACagaAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 213056 0.75 0.815433
Target:  5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3'
miRNA:   3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 104589 0.74 0.871611
Target:  5'- cGCCGGCAcgaUGCAGCUGgcccagCGCCu -3'
miRNA:   3'- -CGGCUGUuuaGCGUCGACagaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 70809 0.74 0.878829
Target:  5'- cGCgGACAAcGUCGCuGC-GUCUggCGCCg -3'
miRNA:   3'- -CGgCUGUU-UAGCGuCGaCAGAa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 57647 0.73 0.892601
Target:  5'- cGCaCGgaucACAGAUCGCAGCUG-CUggauaGCCg -3'
miRNA:   3'- -CG-GC----UGUUUAGCGUCGACaGAag---CGG- -5'
29721 5' -51.3 NC_006273.1 + 188006 0.73 0.898503
Target:  5'- cGCCGGCAAccgcgucGUCGUuGCUaUCgUCGCCg -3'
miRNA:   3'- -CGGCUGUU-------UAGCGuCGAcAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 41136 0.73 0.899147
Target:  5'- uCCGAgGAGUCGuCGucuuccuccucGCUGUCUUCGaCCg -3'
miRNA:   3'- cGGCUgUUUAGC-GU-----------CGACAGAAGC-GG- -5'
29721 5' -51.3 NC_006273.1 + 188246 0.73 0.905463
Target:  5'- aGCCGcaaaAUAGAUCGUggAGCaUGUCU-CGCCa -3'
miRNA:   3'- -CGGC----UGUUUAGCG--UCG-ACAGAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 5743 0.73 0.905463
Target:  5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3'
miRNA:   3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 118359 0.73 0.911544
Target:  5'- uGCCcaACAGGcCGUAGCUGUCUgagcgaaagggaUCGCCc -3'
miRNA:   3'- -CGGc-UGUUUaGCGUCGACAGA------------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 183286 0.73 0.911544
Target:  5'- aCCGGCGccuAUUGUAGCUGUag-CGCCc -3'
miRNA:   3'- cGGCUGUu--UAGCGUCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 130989 0.72 0.928364
Target:  5'- -gCGGCGGGUgGC-GCccGUCUUCGCCg -3'
miRNA:   3'- cgGCUGUUUAgCGuCGa-CAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 30662 0.72 0.928364
Target:  5'- aCCG-CAGAUCGCAGCgGgcg-CGCCu -3'
miRNA:   3'- cGGCuGUUUAGCGUCGaCagaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.