miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 217515 0.72 0.938386
Target:  5'- cGCCGu--AGUCGCAGCggauagcaUCUUCGCa -3'
miRNA:   3'- -CGGCuguUUAGCGUCGac------AGAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 25003 0.72 0.938386
Target:  5'- cGCCGGCcacuuuUCGCAGCagGUCcuuUUCGUCc -3'
miRNA:   3'- -CGGCUGuuu---AGCGUCGa-CAG---AAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 55837 0.71 0.943041
Target:  5'- aCCGGCAGcaagaacuuGUCGCAGCacaggaagGUCUUCuCCa -3'
miRNA:   3'- cGGCUGUU---------UAGCGUCGa-------CAGAAGcGG- -5'
29721 5' -51.3 NC_006273.1 + 168363 0.71 0.943041
Target:  5'- cGuuGAUGAGUCGCAGacgcGUCUguUCGUCg -3'
miRNA:   3'- -CggCUGUUUAGCGUCga--CAGA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 159439 0.71 0.943041
Target:  5'- cGCCGAgGcuuGUUGUaaGGCaccgUGUCUUCGCCc -3'
miRNA:   3'- -CGGCUgUu--UAGCG--UCG----ACAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 117368 0.71 0.94746
Target:  5'- aGCCGGCAGAg-GCGGC-GUCcaugUCGCa -3'
miRNA:   3'- -CGGCUGUUUagCGUCGaCAGa---AGCGg -5'
29721 5' -51.3 NC_006273.1 + 50707 0.71 0.94746
Target:  5'- cGCCGGCGuuaGGUCGCuacucGCUGggagaccagaUCUggUCGCCg -3'
miRNA:   3'- -CGGCUGU---UUAGCGu----CGAC----------AGA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 67458 0.71 0.94746
Target:  5'- uGUgGAgGAcgUGCAGCgUGUCUUgGCCc -3'
miRNA:   3'- -CGgCUgUUuaGCGUCG-ACAGAAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 94801 0.71 0.94746
Target:  5'- uCCGGCuggGGUCGCGGCgGUCg--GCCg -3'
miRNA:   3'- cGGCUGu--UUAGCGUCGaCAGaagCGG- -5'
29721 5' -51.3 NC_006273.1 + 146457 0.71 0.951647
Target:  5'- uGUCGugGugacugagCGCAGCgacuUCUUCGCCg -3'
miRNA:   3'- -CGGCugUuua-----GCGUCGac--AGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 22256 0.71 0.951647
Target:  5'- cGCCGGCGAGcgaCGCGGCUccgccGUCggugCGCUc -3'
miRNA:   3'- -CGGCUGUUUa--GCGUCGA-----CAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 229652 0.71 0.951647
Target:  5'- -aCGACGAGUCGuCGGC-GUCUUccucgggcgaagCGCCa -3'
miRNA:   3'- cgGCUGUUUAGC-GUCGaCAGAA------------GCGG- -5'
29721 5' -51.3 NC_006273.1 + 70586 0.71 0.951647
Target:  5'- cCCGACGAGcaggcUCGCGuGUuuUGUCUgagCGCCg -3'
miRNA:   3'- cGGCUGUUU-----AGCGU-CG--ACAGAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 33066 0.71 0.955604
Target:  5'- cGCCGuCGGGUgCGCGccuGCUcGUCaUCGCCg -3'
miRNA:   3'- -CGGCuGUUUA-GCGU---CGA-CAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 93996 0.71 0.955604
Target:  5'- -aCGuuacCGGAUUGCAGCUGUCgggCGCg -3'
miRNA:   3'- cgGCu---GUUUAGCGUCGACAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 102627 0.71 0.959335
Target:  5'- cCCGGCAcGUCGUAcagcucgucccuGCUGUCgUCGUCu -3'
miRNA:   3'- cGGCUGUuUAGCGU------------CGACAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 177536 0.71 0.959335
Target:  5'- cGCUGGCucggCGCGGCUGUauuauuagaCGCCg -3'
miRNA:   3'- -CGGCUGuuuaGCGUCGACAgaa------GCGG- -5'
29721 5' -51.3 NC_006273.1 + 30710 0.7 0.962845
Target:  5'- gGCCGGCAAGUCGCcuaaaGUCU-CGCg -3'
miRNA:   3'- -CGGCUGUUUAGCGucga-CAGAaGCGg -5'
29721 5' -51.3 NC_006273.1 + 207638 0.7 0.962845
Target:  5'- aGCCGGCAGuucGUCGCGGaUGUaacgcgUGCCg -3'
miRNA:   3'- -CGGCUGUU---UAGCGUCgACAgaa---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 163398 0.7 0.966138
Target:  5'- cGUCG-CGAGgaccgcCGCAGCUGUCUccacaGCCg -3'
miRNA:   3'- -CGGCuGUUUa-----GCGUCGACAGAag---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.