miRNA display CGI


Results 41 - 60 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 88008 0.7 0.968921
Target:  5'- cGCCGACAGGUCGUgcaccucccccccGGCggcGUCcguuaaUCGCUg -3'
miRNA:   3'- -CGGCUGUUUAGCG-------------UCGa--CAGa-----AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 147603 0.7 0.96922
Target:  5'- uGCCGGCcAAaCGCAGCcgGUUguaacCGCCa -3'
miRNA:   3'- -CGGCUGuUUaGCGUCGa-CAGaa---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 148664 0.7 0.96922
Target:  5'- gGCCGGCcugGAGgucugcgCGCAGCUG-CUggagcuccucgUCGCCu -3'
miRNA:   3'- -CGGCUG---UUUa------GCGUCGACaGA-----------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 200618 0.7 0.96922
Target:  5'- cGCCGAUucguAAUCGacaggaGGCUGUgcgCGCCg -3'
miRNA:   3'- -CGGCUGu---UUAGCg-----UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 1358 0.7 0.972097
Target:  5'- gGCgCGACGGAccugCGuCAGCUGUCgcCGCg -3'
miRNA:   3'- -CG-GCUGUUUa---GC-GUCGACAGaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 196251 0.7 0.972097
Target:  5'- gGCgCGACGGAccugCGuCAGCUGUCgcCGCg -3'
miRNA:   3'- -CG-GCUGUUUa---GC-GUCGACAGaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 93221 0.7 0.972097
Target:  5'- cGCCGGUGAAgagagCGCGGCguacgcugGUCacgUCGCCg -3'
miRNA:   3'- -CGGCUGUUUa----GCGUCGa-------CAGa--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 144395 0.7 0.974774
Target:  5'- gGCCuuCGuca-GCGGCUGUCUgcccggCGCCg -3'
miRNA:   3'- -CGGcuGUuuagCGUCGACAGAa-----GCGG- -5'
29721 5' -51.3 NC_006273.1 + 168864 0.7 0.974774
Target:  5'- --aGACAcuuGGUCGUAGCUGUagcuggCUUCGCa -3'
miRNA:   3'- cggCUGU---UUAGCGUCGACA------GAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 45446 0.7 0.974774
Target:  5'- gGCCGACGAGcUGCagacGGCUGUg-UCGCg -3'
miRNA:   3'- -CGGCUGUUUaGCG----UCGACAgaAGCGg -5'
29721 5' -51.3 NC_006273.1 + 167142 0.7 0.974774
Target:  5'- gGCCGGCAAAaUGUAGgUGgcgUUGCCg -3'
miRNA:   3'- -CGGCUGUUUaGCGUCgACagaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 134515 0.69 0.97726
Target:  5'- cGCCGugGcGUCGCccuucuccgugaAGCUGugcaggugcUCUUCGCa -3'
miRNA:   3'- -CGGCugUuUAGCG------------UCGAC---------AGAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 158004 0.69 0.97726
Target:  5'- gGUgGGCAGGaUGCGGUUGUCcUCGCa -3'
miRNA:   3'- -CGgCUGUUUaGCGUCGACAGaAGCGg -5'
29721 5' -51.3 NC_006273.1 + 189220 0.69 0.97726
Target:  5'- uGCCG-CAGggcgGUCGCuAGCgUGUCgcagcgUUCGCCa -3'
miRNA:   3'- -CGGCuGUU----UAGCG-UCG-ACAG------AAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 50335 0.69 0.97726
Target:  5'- cGCCGGCGc--CGguGUUGg--UCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGCguCGACagaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 92445 0.69 0.97726
Target:  5'- uGCaaaaGGCAcGUCgGUAGCUGUCgaugcaCGCCa -3'
miRNA:   3'- -CGg---CUGUuUAG-CGUCGACAGaa----GCGG- -5'
29721 5' -51.3 NC_006273.1 + 30380 0.69 0.97956
Target:  5'- -gCGGC--GUCGCAGCUcGUCacgUCGCUc -3'
miRNA:   3'- cgGCUGuuUAGCGUCGA-CAGa--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 196499 0.69 0.97956
Target:  5'- cGCgGGCGAGguggUGCGGCUGUac-CGCUg -3'
miRNA:   3'- -CGgCUGUUUa---GCGUCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 190879 0.69 0.97956
Target:  5'- cGCCGACGug-CGCGcGUgUGUCUcacCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGCGU-CG-ACAGAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 187965 0.69 0.97956
Target:  5'- cGUCGuACGAGUCGCGGaugaUGUUacccCGCCa -3'
miRNA:   3'- -CGGC-UGUUUAGCGUCg---ACAGaa--GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.