miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 1737 0.66 0.997687
Target:  5'- gGCCGACAg--CGCaAGCgacuUCgaCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGCG-UCGac--AGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 102128 0.66 0.997687
Target:  5'- uGUCGG-AAAUCGCAGCggcaguggCgccgUCGCCa -3'
miRNA:   3'- -CGGCUgUUUAGCGUCGaca-----Ga---AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 28904 0.66 0.997687
Target:  5'- cGCCgGAUAAcGagGCAGCgGUCUUUggGCCa -3'
miRNA:   3'- -CGG-CUGUU-UagCGUCGaCAGAAG--CGG- -5'
29721 5' -51.3 NC_006273.1 + 162821 0.66 0.997687
Target:  5'- cGCCG-CAGcugcggggccucAUCGCAGCcuugcGUCggcaCGCCg -3'
miRNA:   3'- -CGGCuGUU------------UAGCGUCGa----CAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 189812 0.66 0.997687
Target:  5'- cGCCGAUuuuucgcCGCAGCguuugGUCaacUCGUCg -3'
miRNA:   3'- -CGGCUGuuua---GCGUCGa----CAGa--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 199472 0.66 0.997687
Target:  5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3'
miRNA:   3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 199007 0.66 0.997687
Target:  5'- gGCagGAUAAGUuggUGCGGCUGUCgcgCGaCCu -3'
miRNA:   3'- -CGg-CUGUUUA---GCGUCGACAGaa-GC-GG- -5'
29721 5' -51.3 NC_006273.1 + 198088 0.66 0.997687
Target:  5'- uGCCGGCAuguccggccGUCGCaagGGCUGcUCggCgGCCa -3'
miRNA:   3'- -CGGCUGUu--------UAGCG---UCGAC-AGaaG-CGG- -5'
29721 5' -51.3 NC_006273.1 + 38832 0.66 0.997268
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 233724 0.66 0.997268
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 186508 0.66 0.997268
Target:  5'- -gCGGCAAGUagCGCgAGCUGUgg-CGCCc -3'
miRNA:   3'- cgGCUGUUUA--GCG-UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 133520 0.66 0.997268
Target:  5'- aGCCGACua--CGCuGaaacGUUUUCGCCu -3'
miRNA:   3'- -CGGCUGuuuaGCGuCga--CAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 6493 0.66 0.997268
Target:  5'- uCCGGCugcUCGCAGUUGggCUccUCGUCc -3'
miRNA:   3'- cGGCUGuuuAGCGUCGACa-GA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 197986 0.67 0.996788
Target:  5'- cCCGGCGcucAGUCGCGGCUGag--CGUg -3'
miRNA:   3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 71473 0.67 0.996788
Target:  5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3'
miRNA:   3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 187867 0.67 0.996788
Target:  5'- cGCCGugGGAUCgGCuucgagaucgAGCUGggcCUcgcgcggcUCGCCg -3'
miRNA:   3'- -CGGCugUUUAG-CG----------UCGACa--GA--------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 202628 0.67 0.996788
Target:  5'- cGCCGACucgcugcCGCAGUUG-CUggagCGCg -3'
miRNA:   3'- -CGGCUGuuua---GCGUCGACaGAa---GCGg -5'
29721 5' -51.3 NC_006273.1 + 45119 0.67 0.996737
Target:  5'- uGCCGAUggGUucgcuacugcagcUGCAGCUGUaagUGCa -3'
miRNA:   3'- -CGGCUGuuUA-------------GCGUCGACAgaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 87348 0.67 0.996469
Target:  5'- cGUCGACGAcgCGgguucugcucccgaAGCUGUUgcCGCCg -3'
miRNA:   3'- -CGGCUGUUuaGCg-------------UCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 185456 0.67 0.996241
Target:  5'- cGCCGGCGGuaCGCGacCUGUCUcaUUGCUa -3'
miRNA:   3'- -CGGCUGUUuaGCGUc-GACAGA--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.