miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 185456 0.67 0.996241
Target:  5'- cGCCGGCGGuaCGCGacCUGUCUcaUUGCUa -3'
miRNA:   3'- -CGGCUGUUuaGCGUc-GACAGA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 192669 0.67 0.996241
Target:  5'- cGCCGugugg-CGCggccuggccGGCUGUCUgCGCCc -3'
miRNA:   3'- -CGGCuguuuaGCG---------UCGACAGAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 72294 0.67 0.996241
Target:  5'- uGCCGAUGAGgccgccgCGCAGCg--CggCGCUg -3'
miRNA:   3'- -CGGCUGUUUa------GCGUCGacaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 201976 0.67 0.996241
Target:  5'- cGCCGACGcccGAggCGguGCgcGUCcagCGCCu -3'
miRNA:   3'- -CGGCUGU---UUa-GCguCGa-CAGaa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 93288 0.67 0.996002
Target:  5'- gGCCGAgGuuUCGCGGCagcgcaagccgugGUaaccgUCGCCg -3'
miRNA:   3'- -CGGCUgUuuAGCGUCGa------------CAga---AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 27021 0.67 0.995619
Target:  5'- uCCGACGAGcUCGCGGCgcGUagaaaGCCa -3'
miRNA:   3'- cGGCUGUUU-AGCGUCGa-CAgaag-CGG- -5'
29721 5' -51.3 NC_006273.1 + 71855 0.67 0.995619
Target:  5'- gGCCGGgGAGgaGCAGCUGgugUUUCGaCUg -3'
miRNA:   3'- -CGGCUgUUUagCGUCGACa--GAAGC-GG- -5'
29721 5' -51.3 NC_006273.1 + 88599 0.67 0.995619
Target:  5'- cGCCGGCA---CGCcuGCgGUCUUCaaGCCc -3'
miRNA:   3'- -CGGCUGUuuaGCGu-CGaCAGAAG--CGG- -5'
29721 5' -51.3 NC_006273.1 + 217990 0.67 0.995619
Target:  5'- gGCCGGCGGccauacgCGCGGCaaccgcGUCUUCcCCu -3'
miRNA:   3'- -CGGCUGUUua-----GCGUCGa-----CAGAAGcGG- -5'
29721 5' -51.3 NC_006273.1 + 30952 0.67 0.995619
Target:  5'- gGCCGACAAucugggcuUCGagccCAGCgugGUCg-CGCCg -3'
miRNA:   3'- -CGGCUGUUu-------AGC----GUCGa--CAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 90220 0.67 0.995553
Target:  5'- aGCCGGCcca--GCAGCucgggcgUGUUUUCGUCc -3'
miRNA:   3'- -CGGCUGuuuagCGUCG-------ACAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 114567 0.67 0.995485
Target:  5'- cGCCGGCGuggcgcucuaCGCGGUcGcCUUUGCCu -3'
miRNA:   3'- -CGGCUGUuua-------GCGUCGaCaGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 100006 0.67 0.995485
Target:  5'- cGCCGGCAGuggcgugguugcUgGCGGUUGUCgUUGUCg -3'
miRNA:   3'- -CGGCUGUUu-----------AgCGUCGACAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 130844 0.67 0.994916
Target:  5'- cCCGACGAcgagCGCgggucacaAGCUGUCacUGCCg -3'
miRNA:   3'- cGGCUGUUua--GCG--------UCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 28815 0.67 0.994916
Target:  5'- uGCCGACGAAaCGCAGCgGcUCgggGCa -3'
miRNA:   3'- -CGGCUGUUUaGCGUCGaC-AGaagCGg -5'
29721 5' -51.3 NC_006273.1 + 175731 0.67 0.994916
Target:  5'- cGCC--CAAGUCGCcaaAGUcGUCUaUCGCCa -3'
miRNA:   3'- -CGGcuGUUUAGCG---UCGaCAGA-AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 78864 0.67 0.994916
Target:  5'- cGCCcuuGACGAAcUCGCAgGCcGUCUUgCGCa -3'
miRNA:   3'- -CGG---CUGUUU-AGCGU-CGaCAGAA-GCGg -5'
29721 5' -51.3 NC_006273.1 + 62149 0.67 0.994916
Target:  5'- cGCCGGguGAUcaCGCAGCUGgaaaCggcUGCCa -3'
miRNA:   3'- -CGGCUguUUA--GCGUCGACa---Gaa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 201891 0.67 0.994916
Target:  5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3'
miRNA:   3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5'
29721 5' -51.3 NC_006273.1 + 213739 0.67 0.994916
Target:  5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3'
miRNA:   3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.