miRNA display CGI


Results 61 - 80 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 230482 0.67 0.994916
Target:  5'- gGCgGGCGAAUCGgcCGGCUgGUCggUCGgCg -3'
miRNA:   3'- -CGgCUGUUUAGC--GUCGA-CAGa-AGCgG- -5'
29721 5' -51.3 NC_006273.1 + 216958 0.67 0.994916
Target:  5'- aCCGuuCAuuUCGCgGGCcGUCUUgGCCa -3'
miRNA:   3'- cGGCu-GUuuAGCG-UCGaCAGAAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 62149 0.67 0.994916
Target:  5'- cGCCGGguGAUcaCGCAGCUGgaaaCggcUGCCa -3'
miRNA:   3'- -CGGCUguUUA--GCGUCGACa---Gaa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 7135 0.67 0.994688
Target:  5'- cGCCGuauguagaagacguGCGGGUCGCGGgaGgcaCUUCGgCg -3'
miRNA:   3'- -CGGC--------------UGUUUAGCGUCgaCa--GAAGCgG- -5'
29721 5' -51.3 NC_006273.1 + 131904 0.67 0.994124
Target:  5'- uUCGGCAccuccaCGCAGCUGgcg-CGCCa -3'
miRNA:   3'- cGGCUGUuua---GCGUCGACagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 141093 0.67 0.994124
Target:  5'- cGUCGGCAAGUUGCuggacGCUcUC-UCGCUg -3'
miRNA:   3'- -CGGCUGUUUAGCGu----CGAcAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 170629 0.67 0.994124
Target:  5'- cGCCGGCGG---GCAGCU-UCUuuugcaacUCGCCu -3'
miRNA:   3'- -CGGCUGUUuagCGUCGAcAGA--------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 165244 0.67 0.994124
Target:  5'- gGCCGGCGAgccAUCGCcgcacucGCUGUa---GCCg -3'
miRNA:   3'- -CGGCUGUU---UAGCGu------CGACAgaagCGG- -5'
29721 5' -51.3 NC_006273.1 + 33493 0.67 0.994124
Target:  5'- uGCCGACccc-CGguGagcgGUCUUCGCg -3'
miRNA:   3'- -CGGCUGuuuaGCguCga--CAGAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 37644 0.67 0.994124
Target:  5'- cGCgCGGCAAAagGCAcGCUGUUgacggCGCg -3'
miRNA:   3'- -CG-GCUGUUUagCGU-CGACAGaa---GCGg -5'
29721 5' -51.3 NC_006273.1 + 25452 0.68 0.993603
Target:  5'- cGCCGugGGuUgGCAGCUGgccggCUUgaccgcguuguugagCGCCu -3'
miRNA:   3'- -CGGCugUUuAgCGUCGACa----GAA---------------GCGG- -5'
29721 5' -51.3 NC_006273.1 + 98365 0.68 0.993235
Target:  5'- cGCUguGGCAAcgCGCcGCUGUCccgUCGUa -3'
miRNA:   3'- -CGG--CUGUUuaGCGuCGACAGa--AGCGg -5'
29721 5' -51.3 NC_006273.1 + 204008 0.68 0.993235
Target:  5'- uGCCG-CGAugcCGCAGC--UCUUCGUCc -3'
miRNA:   3'- -CGGCuGUUua-GCGUCGacAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 34249 0.68 0.993235
Target:  5'- cGCCGGCAGGcaGCGGCcgaUGagUUCGCg -3'
miRNA:   3'- -CGGCUGUUUagCGUCG---ACagAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 80952 0.68 0.993235
Target:  5'- -gCGGCGAGUCGCccAGCggGUCg--GCCa -3'
miRNA:   3'- cgGCUGUUUAGCG--UCGa-CAGaagCGG- -5'
29721 5' -51.3 NC_006273.1 + 122420 0.68 0.993235
Target:  5'- uCCGGCGGAUCGCGGCccUCccaaagCGCg -3'
miRNA:   3'- cGGCUGUUUAGCGUCGacAGaa----GCGg -5'
29721 5' -51.3 NC_006273.1 + 208018 0.68 0.993235
Target:  5'- uGCUGACGAAcgCGUcuGGCUGUg--UGCCg -3'
miRNA:   3'- -CGGCUGUUUa-GCG--UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 43236 0.68 0.992243
Target:  5'- gGCCGGCuacggCGCuuggAGCUGUagcCGCCu -3'
miRNA:   3'- -CGGCUGuuua-GCG----UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 59229 0.68 0.992243
Target:  5'- -aCGACAAggCGCAGUaccUG-CUgggCGCCg -3'
miRNA:   3'- cgGCUGUUuaGCGUCG---ACaGAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 227345 0.68 0.992243
Target:  5'- gGCCGugGAgaggcGUCGCcGC-GUCUcguUCGUCg -3'
miRNA:   3'- -CGGCugUU-----UAGCGuCGaCAGA---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.