miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 1358 0.7 0.972097
Target:  5'- gGCgCGACGGAccugCGuCAGCUGUCgcCGCg -3'
miRNA:   3'- -CG-GCUGUUUa---GC-GUCGACAGaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 1606 0.69 0.97956
Target:  5'- cGCgGGCGAGguggUGCGGCUGUac-CGCUg -3'
miRNA:   3'- -CGgCUGUUUa---GCGUCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 1689 0.66 0.998636
Target:  5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3'
miRNA:   3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 1737 0.66 0.997687
Target:  5'- gGCCGACAg--CGCaAGCgacuUCgaCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGCG-UCGac--AGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 5743 0.73 0.905463
Target:  5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3'
miRNA:   3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 6493 0.66 0.997268
Target:  5'- uCCGGCugcUCGCAGUUGggCUccUCGUCc -3'
miRNA:   3'- cGGCUGuuuAGCGUCGACa-GA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 7135 0.67 0.994688
Target:  5'- cGCCGuauguagaagacguGCGGGUCGCGGgaGgcaCUUCGgCg -3'
miRNA:   3'- -CGGC--------------UGUUUAGCGUCgaCa--GAAGCgG- -5'
29721 5' -51.3 NC_006273.1 + 12695 0.68 0.992243
Target:  5'- gGUgGGCGAGUCGCuacccuccGGC-GUCUUucaCGCCg -3'
miRNA:   3'- -CGgCUGUUUAGCG--------UCGaCAGAA---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 16753 0.66 0.998636
Target:  5'- aUCGuCAAGUCGCAcCUGgaccgCU-CGCCg -3'
miRNA:   3'- cGGCuGUUUAGCGUcGACa----GAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 20420 0.66 0.998636
Target:  5'- aCUGACGGuccgcUgGCAGCUGUUc-CGCCu -3'
miRNA:   3'- cGGCUGUUu----AgCGUCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 22256 0.71 0.951647
Target:  5'- cGCCGGCGAGcgaCGCGGCUccgccGUCggugCGCUc -3'
miRNA:   3'- -CGGCUGUUUa--GCGUCGA-----CAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 23357 0.69 0.987064
Target:  5'- -gCGACuguGUCaGCGGCUGcgcaUUCGCCu -3'
miRNA:   3'- cgGCUGuu-UAG-CGUCGACag--AAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 25003 0.72 0.938386
Target:  5'- cGCCGGCcacuuuUCGCAGCagGUCcuuUUCGUCc -3'
miRNA:   3'- -CGGCUGuuu---AGCGUCGa-CAG---AAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 25452 0.68 0.993603
Target:  5'- cGCCGugGGuUgGCAGCUGgccggCUUgaccgcguuguugagCGCCu -3'
miRNA:   3'- -CGGCugUUuAgCGUCGACa----GAA---------------GCGG- -5'
29721 5' -51.3 NC_006273.1 + 27021 0.67 0.995619
Target:  5'- uCCGACGAGcUCGCGGCgcGUagaaaGCCa -3'
miRNA:   3'- cGGCUGUUU-AGCGUCGa-CAgaag-CGG- -5'
29721 5' -51.3 NC_006273.1 + 28815 0.67 0.994916
Target:  5'- uGCCGACGAAaCGCAGCgGcUCgggGCa -3'
miRNA:   3'- -CGGCUGUUUaGCGUCGaC-AGaagCGg -5'
29721 5' -51.3 NC_006273.1 + 28904 0.66 0.997687
Target:  5'- cGCCgGAUAAcGagGCAGCgGUCUUUggGCCa -3'
miRNA:   3'- -CGG-CUGUU-UagCGUCGaCAGAAG--CGG- -5'
29721 5' -51.3 NC_006273.1 + 30380 0.69 0.97956
Target:  5'- -gCGGC--GUCGCAGCUcGUCacgUCGCUc -3'
miRNA:   3'- cgGCUGuuUAGCGUCGA-CAGa--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 30662 0.72 0.928364
Target:  5'- aCCG-CAGAUCGCAGCgGgcg-CGCCu -3'
miRNA:   3'- cGGCuGUUUAGCGUCGaCagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 30710 0.7 0.962845
Target:  5'- gGCCGGCAAGUCGCcuaaaGUCU-CGCg -3'
miRNA:   3'- -CGGCUGUUUAGCGucga-CAGAaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.