miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 30815 0.66 0.998365
Target:  5'- -gCGACGAGUCGUcuGC-GUCcUCGUCg -3'
miRNA:   3'- cgGCUGUUUAGCGu-CGaCAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 30952 0.67 0.995619
Target:  5'- gGCCGACAAucugggcuUCGagccCAGCgugGUCg-CGCCg -3'
miRNA:   3'- -CGGCUGUUu-------AGC----GUCGa--CAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 33066 0.71 0.955604
Target:  5'- cGCCGuCGGGUgCGCGccuGCUcGUCaUCGCCg -3'
miRNA:   3'- -CGGCuGUUUA-GCGU---CGA-CAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 33493 0.67 0.994124
Target:  5'- uGCCGACccc-CGguGagcgGUCUUCGCg -3'
miRNA:   3'- -CGGCUGuuuaGCguCga--CAGAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 34249 0.68 0.993235
Target:  5'- cGCCGGCAGGcaGCGGCcgaUGagUUCGCg -3'
miRNA:   3'- -CGGCUGUUUagCGUCG---ACagAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 37644 0.67 0.994124
Target:  5'- cGCgCGGCAAAagGCAcGCUGUUgacggCGCg -3'
miRNA:   3'- -CG-GCUGUUUagCGU-CGACAGaa---GCGg -5'
29721 5' -51.3 NC_006273.1 + 37742 0.69 0.987064
Target:  5'- aCCGACGcagcGUCuccacgugcuGCAGCUGUCggCGCg -3'
miRNA:   3'- cGGCUGUu---UAG----------CGUCGACAGaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 38591 0.68 0.992243
Target:  5'- aCUGGCAGAgcgccUGCGGCUGUgc-CGCCa -3'
miRNA:   3'- cGGCUGUUUa----GCGUCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 38759 0.69 0.980855
Target:  5'- uGCCGGCccaccgccggCGCAGCUcccGUCcgagCGCCg -3'
miRNA:   3'- -CGGCUGuuua------GCGUCGA---CAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 38832 0.66 0.997268
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 41136 0.73 0.899147
Target:  5'- uCCGAgGAGUCGuCGucuuccuccucGCUGUCUUCGaCCg -3'
miRNA:   3'- cGGCUgUUUAGC-GU-----------CGACAGAAGC-GG- -5'
29721 5' -51.3 NC_006273.1 + 41564 0.66 0.998365
Target:  5'- cGCC-ACAGcaUGC-GCUGUCgcCGCCg -3'
miRNA:   3'- -CGGcUGUUuaGCGuCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 42769 0.66 0.998365
Target:  5'- cGCCG-CGAGUCGCAuuCUG-CacCGCCg -3'
miRNA:   3'- -CGGCuGUUUAGCGUc-GACaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 43236 0.68 0.992243
Target:  5'- gGCCGGCuacggCGCuuggAGCUGUagcCGCCu -3'
miRNA:   3'- -CGGCUGuuua-GCG----UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 45119 0.67 0.996737
Target:  5'- uGCCGAUggGUucgcuacugcagcUGCAGCUGUaagUGCa -3'
miRNA:   3'- -CGGCUGuuUA-------------GCGUCGACAgaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 45446 0.7 0.974774
Target:  5'- gGCCGACGAGcUGCagacGGCUGUg-UCGCg -3'
miRNA:   3'- -CGGCUGUUUaGCG----UCGACAgaAGCGg -5'
29721 5' -51.3 NC_006273.1 + 46342 0.69 0.981683
Target:  5'- cGCCGGuccgggccccCAccaCGCGGCUGUCgUCGCa -3'
miRNA:   3'- -CGGCU----------GUuuaGCGUCGACAGaAGCGg -5'
29721 5' -51.3 NC_006273.1 + 47823 0.68 0.991137
Target:  5'- cGCCGGu---UCGCGGacCUGUCgUCGCUg -3'
miRNA:   3'- -CGGCUguuuAGCGUC--GACAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 47884 0.68 0.991137
Target:  5'- aCCGACGcggcuucuucGUCGCcGC-GUCUUCGUCg -3'
miRNA:   3'- cGGCUGUu---------UAGCGuCGaCAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 50335 0.69 0.97726
Target:  5'- cGCCGGCGc--CGguGUUGg--UCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGCguCGACagaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.