miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 50707 0.71 0.94746
Target:  5'- cGCCGGCGuuaGGUCGCuacucGCUGggagaccagaUCUggUCGCCg -3'
miRNA:   3'- -CGGCUGU---UUAGCGu----CGAC----------AGA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 55837 0.71 0.943041
Target:  5'- aCCGGCAGcaagaacuuGUCGCAGCacaggaagGUCUUCuCCa -3'
miRNA:   3'- cGGCUGUU---------UAGCGUCGa-------CAGAAGcGG- -5'
29721 5' -51.3 NC_006273.1 + 57647 0.73 0.892601
Target:  5'- cGCaCGgaucACAGAUCGCAGCUG-CUggauaGCCg -3'
miRNA:   3'- -CG-GC----UGUUUAGCGUCGACaGAag---CGG- -5'
29721 5' -51.3 NC_006273.1 + 59229 0.68 0.992243
Target:  5'- -aCGACAAggCGCAGUaccUG-CUgggCGCCg -3'
miRNA:   3'- cgGCUGUUuaGCGUCG---ACaGAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 59449 0.66 0.99861
Target:  5'- cGCCGACuaaauucauGUCGCGcgauaguGgUGUUUaUCGCCg -3'
miRNA:   3'- -CGGCUGuu-------UAGCGU-------CgACAGA-AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 62149 0.67 0.994916
Target:  5'- cGCCGGguGAUcaCGCAGCUGgaaaCggcUGCCa -3'
miRNA:   3'- -CGGCUguUUA--GCGUCGACa---Gaa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 63401 0.68 0.991137
Target:  5'- aGCCGugGGuUCGCcGC-GUCUuuUCGCa -3'
miRNA:   3'- -CGGCugUUuAGCGuCGaCAGA--AGCGg -5'
29721 5' -51.3 NC_006273.1 + 65121 0.68 0.992243
Target:  5'- uUCGGCG---UGCAGCUGUCgccCGCUu -3'
miRNA:   3'- cGGCUGUuuaGCGUCGACAGaa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 67088 0.68 0.989911
Target:  5'- cGCgCGACGAGUCGCcGCgaccgacGUUUUuugaCGCCg -3'
miRNA:   3'- -CG-GCUGUUUAGCGuCGa------CAGAA----GCGG- -5'
29721 5' -51.3 NC_006273.1 + 67458 0.71 0.94746
Target:  5'- uGUgGAgGAcgUGCAGCgUGUCUUgGCCc -3'
miRNA:   3'- -CGgCUgUUuaGCGUCG-ACAGAAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 68240 0.66 0.998051
Target:  5'- cGCCGACuuccaGCGGCccGUCUUcaaaaCGCUg -3'
miRNA:   3'- -CGGCUGuuuagCGUCGa-CAGAA-----GCGG- -5'
29721 5' -51.3 NC_006273.1 + 70586 0.71 0.951647
Target:  5'- cCCGACGAGcaggcUCGCGuGUuuUGUCUgagCGCCg -3'
miRNA:   3'- cGGCUGUUU-----AGCGU-CG--ACAGAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 70809 0.74 0.878829
Target:  5'- cGCgGACAAcGUCGCuGC-GUCUggCGCCg -3'
miRNA:   3'- -CGgCUGUU-UAGCGuCGaCAGAa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 71473 0.67 0.996788
Target:  5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3'
miRNA:   3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 71737 0.68 0.988556
Target:  5'- cUCGACAcagCGgGGCgccGUCUUCGCUu -3'
miRNA:   3'- cGGCUGUuuaGCgUCGa--CAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 71855 0.67 0.995619
Target:  5'- gGCCGGgGAGgaGCAGCUGgugUUUCGaCUg -3'
miRNA:   3'- -CGGCUgUUUagCGUCGACa--GAAGC-GG- -5'
29721 5' -51.3 NC_006273.1 + 72294 0.67 0.996241
Target:  5'- uGCCGAUGAGgccgccgCGCAGCg--CggCGCUg -3'
miRNA:   3'- -CGGCUGUUUa------GCGUCGacaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 78864 0.67 0.994916
Target:  5'- cGCCcuuGACGAAcUCGCAgGCcGUCUUgCGCa -3'
miRNA:   3'- -CGG---CUGUUU-AGCGU-CGaCAGAA-GCGg -5'
29721 5' -51.3 NC_006273.1 + 80952 0.68 0.993235
Target:  5'- -gCGGCGAGUCGCccAGCggGUCg--GCCa -3'
miRNA:   3'- cgGCUGUUUAGCG--UCGa-CAGaagCGG- -5'
29721 5' -51.3 NC_006273.1 + 81465 0.68 0.991137
Target:  5'- uGCUGACGAuagCGCGGCgacacGUUUUCGg- -3'
miRNA:   3'- -CGGCUGUUua-GCGUCGa----CAGAAGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.