miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 233724 0.66 0.997268
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 233651 0.69 0.980855
Target:  5'- uGCCGGCccaccgccggCGCAGCUcccGUCcgagCGCCg -3'
miRNA:   3'- -CGGCUGuuua------GCGUCGA---CAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 233643 0.76 0.760732
Target:  5'- aGUCGGCGucgaAGUCGCuugcGCUGUCggcccagUCGCCa -3'
miRNA:   3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 231720 0.66 0.997802
Target:  5'- cGUCGGCAugccgcuGAUCGCAGUggccccaccucggcaUGcCggCGCCg -3'
miRNA:   3'- -CGGCUGU-------UUAGCGUCG---------------ACaGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 230482 0.67 0.994916
Target:  5'- gGCgGGCGAAUCGgcCGGCUgGUCggUCGgCg -3'
miRNA:   3'- -CGgCUGUUUAGC--GUCGA-CAGa-AGCgG- -5'
29721 5' -51.3 NC_006273.1 + 229652 0.71 0.951647
Target:  5'- -aCGACGAGUCGuCGGC-GUCUUccucgggcgaagCGCCa -3'
miRNA:   3'- cgGCUGUUUAGC-GUCGaCAGAA------------GCGG- -5'
29721 5' -51.3 NC_006273.1 + 228468 0.68 0.992243
Target:  5'- cGUCGACGGGcUCgGCGGCUGca--CGCCg -3'
miRNA:   3'- -CGGCUGUUU-AG-CGUCGACagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 227732 1.15 0.005343
Target:  5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3'
miRNA:   3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 227345 0.68 0.992243
Target:  5'- gGCCGugGAgaggcGUCGCcGC-GUCUcguUCGUCg -3'
miRNA:   3'- -CGGCugUU-----UAGCGuCGaCAGA---AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 227296 0.68 0.988556
Target:  5'- uCUGGCGAcgCGUGGC-GUUaUCGCCg -3'
miRNA:   3'- cGGCUGUUuaGCGUCGaCAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 218223 0.68 0.988556
Target:  5'- aCCGGCAuggCGCGGCcGUCguuuccUUCGUCu -3'
miRNA:   3'- cGGCUGUuuaGCGUCGaCAG------AAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 217990 0.67 0.995619
Target:  5'- gGCCGGCGGccauacgCGCGGCaaccgcGUCUUCcCCu -3'
miRNA:   3'- -CGGCUGUUua-----GCGUCGa-----CAGAAGcGG- -5'
29721 5' -51.3 NC_006273.1 + 217678 0.76 0.779516
Target:  5'- cGUCaGACGAAUCGCGGCUGg--UgGCCc -3'
miRNA:   3'- -CGG-CUGUUUAGCGUCGACagaAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 217515 0.72 0.938386
Target:  5'- cGCCGu--AGUCGCAGCggauagcaUCUUCGCa -3'
miRNA:   3'- -CGGCuguUUAGCGUCGac------AGAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 216958 0.67 0.994916
Target:  5'- aCCGuuCAuuUCGCgGGCcGUCUUgGCCa -3'
miRNA:   3'- cGGCu-GUuuAGCG-UCGaCAGAAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 214769 0.68 0.991137
Target:  5'- uGCCGGCGguauGAUCGcCAGUucuUGcgCUUCgGCCg -3'
miRNA:   3'- -CGGCUGU----UUAGC-GUCG---ACa-GAAG-CGG- -5'
29721 5' -51.3 NC_006273.1 + 213739 0.67 0.994916
Target:  5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3'
miRNA:   3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 213474 0.67 0.996241
Target:  5'- uGCCGGCGgc-UGCAGUUGUUgucCGCg -3'
miRNA:   3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 213056 0.75 0.815433
Target:  5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3'
miRNA:   3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 208018 0.68 0.993235
Target:  5'- uGCUGACGAAcgCGUcuGGCUGUg--UGCCg -3'
miRNA:   3'- -CGGCUGUUUa-GCG--UCGACAgaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.