miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 207638 0.7 0.962845
Target:  5'- aGCCGGCAGuucGUCGCGGaUGUaacgcgUGCCg -3'
miRNA:   3'- -CGGCUGUU---UAGCGUCgACAgaa---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 204008 0.68 0.993235
Target:  5'- uGCCG-CGAugcCGCAGC--UCUUCGUCc -3'
miRNA:   3'- -CGGCuGUUua-GCGUCGacAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 203918 0.82 0.490955
Target:  5'- gGCCGACGAGgaggCGCAGCcaccgccucaUGgcggCUUCGCCa -3'
miRNA:   3'- -CGGCUGUUUa---GCGUCG----------ACa---GAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 202628 0.67 0.996788
Target:  5'- cGCCGACucgcugcCGCAGUUG-CUggagCGCg -3'
miRNA:   3'- -CGGCUGuuua---GCGUCGACaGAa---GCGg -5'
29721 5' -51.3 NC_006273.1 + 201976 0.67 0.996241
Target:  5'- cGCCGACGcccGAggCGguGCgcGUCcagCGCCu -3'
miRNA:   3'- -CGGCUGU---UUa-GCguCGa-CAGaa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 201891 0.67 0.994916
Target:  5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3'
miRNA:   3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5'
29721 5' -51.3 NC_006273.1 + 201513 0.69 0.987064
Target:  5'- cGCCGACuGGUCGCAGaCgcugGUCgaCGaCUa -3'
miRNA:   3'- -CGGCUGuUUAGCGUC-Ga---CAGaaGC-GG- -5'
29721 5' -51.3 NC_006273.1 + 200618 0.7 0.96922
Target:  5'- cGCCGAUucguAAUCGacaggaGGCUGUgcgCGCCg -3'
miRNA:   3'- -CGGCUGu---UUAGCg-----UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 199472 0.66 0.997687
Target:  5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3'
miRNA:   3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 199007 0.66 0.997687
Target:  5'- gGCagGAUAAGUuggUGCGGCUGUCgcgCGaCCu -3'
miRNA:   3'- -CGg-CUGUUUA---GCGUCGACAGaa-GC-GG- -5'
29721 5' -51.3 NC_006273.1 + 198088 0.66 0.997687
Target:  5'- uGCCGGCAuguccggccGUCGCaagGGCUGcUCggCgGCCa -3'
miRNA:   3'- -CGGCUGUu--------UAGCG---UCGAC-AGaaG-CGG- -5'
29721 5' -51.3 NC_006273.1 + 197986 0.67 0.996788
Target:  5'- cCCGGCGcucAGUCGCGGCUGag--CGUg -3'
miRNA:   3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 196582 0.66 0.998636
Target:  5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3'
miRNA:   3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 196499 0.69 0.97956
Target:  5'- cGCgGGCGAGguggUGCGGCUGUac-CGCUg -3'
miRNA:   3'- -CGgCUGUUUa---GCGUCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 196251 0.7 0.972097
Target:  5'- gGCgCGACGGAccugCGuCAGCUGUCgcCGCg -3'
miRNA:   3'- -CG-GCUGUUUa---GC-GUCGACAGaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 192669 0.67 0.996241
Target:  5'- cGCCGugugg-CGCggccuggccGGCUGUCUgCGCCc -3'
miRNA:   3'- -CGGCuguuuaGCG---------UCGACAGAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 190879 0.69 0.97956
Target:  5'- cGCCGACGug-CGCGcGUgUGUCUcacCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGCGU-CG-ACAGAa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 189812 0.66 0.997687
Target:  5'- cGCCGAUuuuucgcCGCAGCguuugGUCaacUCGUCg -3'
miRNA:   3'- -CGGCUGuuua---GCGUCGa----CAGa--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 189220 0.69 0.97726
Target:  5'- uGCCG-CAGggcgGUCGCuAGCgUGUCgcagcgUUCGCCa -3'
miRNA:   3'- -CGGCuGUU----UAGCG-UCG-ACAG------AAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 188246 0.73 0.905463
Target:  5'- aGCCGcaaaAUAGAUCGUggAGCaUGUCU-CGCCa -3'
miRNA:   3'- -CGGC----UGUUUAGCG--UCG-ACAGAaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.