miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 33066 0.71 0.955604
Target:  5'- cGCCGuCGGGUgCGCGccuGCUcGUCaUCGCCg -3'
miRNA:   3'- -CGGCuGUUUA-GCGU---CGA-CAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 217515 0.72 0.938386
Target:  5'- cGCCGu--AGUCGCAGCggauagcaUCUUCGCa -3'
miRNA:   3'- -CGGCuguUUAGCGUCGac------AGAAGCGg -5'
29721 5' -51.3 NC_006273.1 + 55837 0.71 0.943041
Target:  5'- aCCGGCAGcaagaacuuGUCGCAGCacaggaagGUCUUCuCCa -3'
miRNA:   3'- cGGCUGUU---------UAGCGUCGa-------CAGAAGcGG- -5'
29721 5' -51.3 NC_006273.1 + 67458 0.71 0.94746
Target:  5'- uGUgGAgGAcgUGCAGCgUGUCUUgGCCc -3'
miRNA:   3'- -CGgCUgUUuaGCGUCG-ACAGAAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 117368 0.71 0.94746
Target:  5'- aGCCGGCAGAg-GCGGC-GUCcaugUCGCa -3'
miRNA:   3'- -CGGCUGUUUagCGUCGaCAGa---AGCGg -5'
29721 5' -51.3 NC_006273.1 + 94801 0.71 0.94746
Target:  5'- uCCGGCuggGGUCGCGGCgGUCg--GCCg -3'
miRNA:   3'- cGGCUGu--UUAGCGUCGaCAGaagCGG- -5'
29721 5' -51.3 NC_006273.1 + 146457 0.71 0.951647
Target:  5'- uGUCGugGugacugagCGCAGCgacuUCUUCGCCg -3'
miRNA:   3'- -CGGCugUuua-----GCGUCGac--AGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 22256 0.71 0.951647
Target:  5'- cGCCGGCGAGcgaCGCGGCUccgccGUCggugCGCUc -3'
miRNA:   3'- -CGGCUGUUUa--GCGUCGA-----CAGaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 229652 0.71 0.951647
Target:  5'- -aCGACGAGUCGuCGGC-GUCUUccucgggcgaagCGCCa -3'
miRNA:   3'- cgGCUGUUUAGC-GUCGaCAGAA------------GCGG- -5'
29721 5' -51.3 NC_006273.1 + 30662 0.72 0.928364
Target:  5'- aCCG-CAGAUCGCAGCgGgcg-CGCCu -3'
miRNA:   3'- cGGCuGUUUAGCGUCGaCagaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 183286 0.73 0.911544
Target:  5'- aCCGGCGccuAUUGUAGCUGUag-CGCCc -3'
miRNA:   3'- cGGCUGUu--UAGCGUCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 188246 0.73 0.905463
Target:  5'- aGCCGcaaaAUAGAUCGUggAGCaUGUCU-CGCCa -3'
miRNA:   3'- -CGGC----UGUUUAGCG--UCG-ACAGAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 148833 0.79 0.61037
Target:  5'- gGCCGGCGGcgaucGUCGCuGGCUGUUgcCGCCg -3'
miRNA:   3'- -CGGCUGUU-----UAGCG-UCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 87842 0.78 0.651252
Target:  5'- cGCCGACGc--CGcCAGCcucGUCUUCGCCg -3'
miRNA:   3'- -CGGCUGUuuaGC-GUCGa--CAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 217678 0.76 0.779516
Target:  5'- cGUCaGACGAAUCGCGGCUGg--UgGCCc -3'
miRNA:   3'- -CGG-CUGUUUAGCGUCGACagaAgCGG- -5'
29721 5' -51.3 NC_006273.1 + 104589 0.74 0.871611
Target:  5'- cGCCGGCAcgaUGCAGCUGgcccagCGCCu -3'
miRNA:   3'- -CGGCUGUuuaGCGUCGACagaa--GCGG- -5'
29721 5' -51.3 NC_006273.1 + 70809 0.74 0.878829
Target:  5'- cGCgGACAAcGUCGCuGC-GUCUggCGCCg -3'
miRNA:   3'- -CGgCUGUU-UAGCGuCGaCAGAa-GCGG- -5'
29721 5' -51.3 NC_006273.1 + 57647 0.73 0.892601
Target:  5'- cGCaCGgaucACAGAUCGCAGCUG-CUggauaGCCg -3'
miRNA:   3'- -CG-GC----UGUUUAGCGUCGACaGAag---CGG- -5'
29721 5' -51.3 NC_006273.1 + 188006 0.73 0.898503
Target:  5'- cGCCGGCAAccgcgucGUCGUuGCUaUCgUCGCCg -3'
miRNA:   3'- -CGGCUGUU-------UAGCGuCGAcAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 41136 0.73 0.899147
Target:  5'- uCCGAgGAGUCGuCGucuuccuccucGCUGUCUUCGaCCg -3'
miRNA:   3'- cGGCUgUUUAGC-GU-----------CGACAGAAGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.