Results 21 - 40 of 172 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 33066 | 0.71 | 0.955604 |
Target: 5'- cGCCGuCGGGUgCGCGccuGCUcGUCaUCGCCg -3' miRNA: 3'- -CGGCuGUUUA-GCGU---CGA-CAGaAGCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 229652 | 0.71 | 0.951647 |
Target: 5'- -aCGACGAGUCGuCGGC-GUCUUccucgggcgaagCGCCa -3' miRNA: 3'- cgGCUGUUUAGC-GUCGaCAGAA------------GCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 41136 | 0.73 | 0.899147 |
Target: 5'- uCCGAgGAGUCGuCGucuuccuccucGCUGUCUUCGaCCg -3' miRNA: 3'- cGGCUgUUUAGC-GU-----------CGACAGAAGC-GG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 188006 | 0.73 | 0.898503 |
Target: 5'- cGCCGGCAAccgcgucGUCGUuGCUaUCgUCGCCg -3' miRNA: 3'- -CGGCUGUU-------UAGCGuCGAcAGaAGCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 57647 | 0.73 | 0.892601 |
Target: 5'- cGCaCGgaucACAGAUCGCAGCUG-CUggauaGCCg -3' miRNA: 3'- -CG-GC----UGUUUAGCGUCGACaGAag---CGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 70809 | 0.74 | 0.878829 |
Target: 5'- cGCgGACAAcGUCGCuGC-GUCUggCGCCg -3' miRNA: 3'- -CGgCUGUU-UAGCGuCGaCAGAa-GCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 104589 | 0.74 | 0.871611 |
Target: 5'- cGCCGGCAcgaUGCAGCUGgcccagCGCCu -3' miRNA: 3'- -CGGCUGUuuaGCGUCGACagaa--GCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 217678 | 0.76 | 0.779516 |
Target: 5'- cGUCaGACGAAUCGCGGCUGg--UgGCCc -3' miRNA: 3'- -CGG-CUGUUUAGCGUCGACagaAgCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 87842 | 0.78 | 0.651252 |
Target: 5'- cGCCGACGc--CGcCAGCcucGUCUUCGCCg -3' miRNA: 3'- -CGGCUGUuuaGC-GUCGa--CAGAAGCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 148833 | 0.79 | 0.61037 |
Target: 5'- gGCCGGCGGcgaucGUCGCuGGCUGUUgcCGCCg -3' miRNA: 3'- -CGGCUGUU-----UAGCG-UCGACAGaaGCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 188246 | 0.73 | 0.905463 |
Target: 5'- aGCCGcaaaAUAGAUCGUggAGCaUGUCU-CGCCa -3' miRNA: 3'- -CGGC----UGUUUAGCG--UCG-ACAGAaGCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 183286 | 0.73 | 0.911544 |
Target: 5'- aCCGGCGccuAUUGUAGCUGUag-CGCCc -3' miRNA: 3'- cGGCUGUu--UAGCGUCGACAgaaGCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 22256 | 0.71 | 0.951647 |
Target: 5'- cGCCGGCGAGcgaCGCGGCUccgccGUCggugCGCUc -3' miRNA: 3'- -CGGCUGUUUa--GCGUCGA-----CAGaa--GCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 146457 | 0.71 | 0.951647 |
Target: 5'- uGUCGugGugacugagCGCAGCgacuUCUUCGCCg -3' miRNA: 3'- -CGGCugUuua-----GCGUCGac--AGAAGCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 94801 | 0.71 | 0.94746 |
Target: 5'- uCCGGCuggGGUCGCGGCgGUCg--GCCg -3' miRNA: 3'- cGGCUGu--UUAGCGUCGaCAGaagCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 117368 | 0.71 | 0.94746 |
Target: 5'- aGCCGGCAGAg-GCGGC-GUCcaugUCGCa -3' miRNA: 3'- -CGGCUGUUUagCGUCGaCAGa---AGCGg -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 67458 | 0.71 | 0.94746 |
Target: 5'- uGUgGAgGAcgUGCAGCgUGUCUUgGCCc -3' miRNA: 3'- -CGgCUgUUuaGCGUCG-ACAGAAgCGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 55837 | 0.71 | 0.943041 |
Target: 5'- aCCGGCAGcaagaacuuGUCGCAGCacaggaagGUCUUCuCCa -3' miRNA: 3'- cGGCUGUU---------UAGCGUCGa-------CAGAAGcGG- -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 217515 | 0.72 | 0.938386 |
Target: 5'- cGCCGu--AGUCGCAGCggauagcaUCUUCGCa -3' miRNA: 3'- -CGGCuguUUAGCGUCGac------AGAAGCGg -5' |
|||||||
29721 | 5' | -51.3 | NC_006273.1 | + | 30662 | 0.72 | 0.928364 |
Target: 5'- aCCG-CAGAUCGCAGCgGgcg-CGCCu -3' miRNA: 3'- cGGCuGUUUAGCGUCGaCagaaGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home