miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29721 5' -51.3 NC_006273.1 + 227732 1.15 0.005343
Target:  5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3'
miRNA:   3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 148664 0.7 0.96922
Target:  5'- gGCCGGCcugGAGgucugcgCGCAGCUG-CUggagcuccucgUCGCCu -3'
miRNA:   3'- -CGGCUG---UUUa------GCGUCGACaGA-----------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 1358 0.7 0.972097
Target:  5'- gGCgCGACGGAccugCGuCAGCUGUCgcCGCg -3'
miRNA:   3'- -CG-GCUGUUUa---GC-GUCGACAGaaGCGg -5'
29721 5' -51.3 NC_006273.1 + 16753 0.66 0.998636
Target:  5'- aUCGuCAAGUCGCAcCUGgaccgCU-CGCCg -3'
miRNA:   3'- cGGCuGUUUAGCGUcGACa----GAaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 213056 0.75 0.815433
Target:  5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3'
miRNA:   3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 5743 0.73 0.905463
Target:  5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3'
miRNA:   3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 130989 0.72 0.928364
Target:  5'- -gCGGCGGGUgGC-GCccGUCUUCGCCg -3'
miRNA:   3'- cgGCUGUUUAgCGuCGa-CAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 25003 0.72 0.938386
Target:  5'- cGCCGGCcacuuuUCGCAGCagGUCcuuUUCGUCc -3'
miRNA:   3'- -CGGCUGuuu---AGCGUCGa-CAG---AAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 50707 0.71 0.94746
Target:  5'- cGCCGGCGuuaGGUCGCuacucGCUGggagaccagaUCUggUCGCCg -3'
miRNA:   3'- -CGGCUGU---UUAGCGu----CGAC----------AGA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 147603 0.7 0.96922
Target:  5'- uGCCGGCcAAaCGCAGCcgGUUguaacCGCCa -3'
miRNA:   3'- -CGGCUGuUUaGCGUCGa-CAGaa---GCGG- -5'
29721 5' -51.3 NC_006273.1 + 93996 0.71 0.955604
Target:  5'- -aCGuuacCGGAUUGCAGCUGUCgggCGCg -3'
miRNA:   3'- cgGCu---GUUUAGCGUCGACAGaa-GCGg -5'
29721 5' -51.3 NC_006273.1 + 159439 0.71 0.943041
Target:  5'- cGCCGAgGcuuGUUGUaaGGCaccgUGUCUUCGCCc -3'
miRNA:   3'- -CGGCUgUu--UAGCG--UCG----ACAGAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 166874 0.78 0.670618
Target:  5'- cGCCGACAGGUacgGCAGUUGUugcguggCUUUGCCc -3'
miRNA:   3'- -CGGCUGUUUAg--CGUCGACA-------GAAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 102627 0.71 0.959335
Target:  5'- cCCGGCAcGUCGUAcagcucgucccuGCUGUCgUCGUCu -3'
miRNA:   3'- cGGCUGUuUAGCGU------------CGACAGaAGCGG- -5'
29721 5' -51.3 NC_006273.1 + 110991 0.77 0.701944
Target:  5'- -aCGACGAGaucgCGCGGCUGUCggCGCUu -3'
miRNA:   3'- cgGCUGUUUa---GCGUCGACAGaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 168363 0.71 0.943041
Target:  5'- cGuuGAUGAGUCGCAGacgcGUCUguUCGUCg -3'
miRNA:   3'- -CggCUGUUUAGCGUCga--CAGA--AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 177536 0.71 0.959335
Target:  5'- cGCUGGCucggCGCGGCUGUauuauuagaCGCCg -3'
miRNA:   3'- -CGGCUGuuuaGCGUCGACAgaa------GCGG- -5'
29721 5' -51.3 NC_006273.1 + 200618 0.7 0.96922
Target:  5'- cGCCGAUucguAAUCGacaggaGGCUGUgcgCGCCg -3'
miRNA:   3'- -CGGCUGu---UUAGCg-----UCGACAgaaGCGG- -5'
29721 5' -51.3 NC_006273.1 + 233643 0.76 0.760732
Target:  5'- aGUCGGCGucgaAGUCGCuugcGCUGUCggcccagUCGCCa -3'
miRNA:   3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5'
29721 5' -51.3 NC_006273.1 + 118359 0.73 0.911544
Target:  5'- uGCCcaACAGGcCGUAGCUGUCUgagcgaaagggaUCGCCc -3'
miRNA:   3'- -CGGc-UGUUUaGCGUCGACAGA------------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.