miRNA display CGI


Results 1 - 20 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 20591 0.66 0.999917
Target:  5'- --cUCGAGUGgUucAAAAAGUuCACCGUa -3'
miRNA:   3'- uuuGGCUCACgA--UUUUUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 52590 0.66 0.999917
Target:  5'- gGGACCGuGUGCggucucuuGGGCuCGCUGUa -3'
miRNA:   3'- -UUUGGCuCACGauuu----UUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 130078 0.66 0.999917
Target:  5'- gGAACCGAGgaacGCUAcgcuauGGCcuGCcuGCCGCg -3'
miRNA:   3'- -UUUGGCUCa---CGAUuuu---UCG--UG--UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 68316 0.66 0.999917
Target:  5'- gAGGCCGAucUGCUGAAucagaAAGUACAgaCGCa -3'
miRNA:   3'- -UUUGGCUc-ACGAUUU-----UUCGUGUg-GCG- -5'
29723 3' -48.3 NC_006273.1 + 80761 0.66 0.999917
Target:  5'- --cCCGAGUGCccAAAGAuCACACCc- -3'
miRNA:   3'- uuuGGCUCACGa-UUUUUcGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 188823 0.66 0.999895
Target:  5'- --cUCGAGUGCguauacggggcuGGGCACGCCa- -3'
miRNA:   3'- uuuGGCUCACGauuu--------UUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 41440 0.66 0.999892
Target:  5'- uGACCGGG-GUUu--GGGUAC-CCGCg -3'
miRNA:   3'- uUUGGCUCaCGAuuuUUCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 21316 0.66 0.999892
Target:  5'- cAGCCG-GUGCgcGAccGCA-ACCGCg -3'
miRNA:   3'- uUUGGCuCACGauUUuuCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 231710 0.66 0.999892
Target:  5'- --cCCGGGUcgGCguc--GGCAUGCCGCu -3'
miRNA:   3'- uuuGGCUCA--CGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 140661 0.66 0.999892
Target:  5'- gGAGCUGGGUGggGGAuccccggucGCcCACCGCg -3'
miRNA:   3'- -UUUGGCUCACgaUUUuu-------CGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 78681 0.66 0.999892
Target:  5'- gGGGCCGGGguccGCg----GGCAcCGCCGCc -3'
miRNA:   3'- -UUUGGCUCa---CGauuuuUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 152189 0.66 0.999892
Target:  5'- cAACCGGGcGCU----GGCGCAaaUCGCa -3'
miRNA:   3'- uUUGGCUCaCGAuuuuUCGUGU--GGCG- -5'
29723 3' -48.3 NC_006273.1 + 46314 0.66 0.999892
Target:  5'- --cCCGGGcGC-AAGAAGCggccgccuACGCCGCc -3'
miRNA:   3'- uuuGGCUCaCGaUUUUUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 79869 0.66 0.999883
Target:  5'- gGAGCCGGGUGaaacgccguccugaCUGGAcGGCGCAgaUUGCa -3'
miRNA:   3'- -UUUGGCUCAC--------------GAUUUuUCGUGU--GGCG- -5'
29723 3' -48.3 NC_006273.1 + 130179 0.66 0.99986
Target:  5'- gAAACCGAGgaacagGC--AAAGGCcgACACgGCg -3'
miRNA:   3'- -UUUGGCUCa-----CGauUUUUCG--UGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 175678 0.66 0.99986
Target:  5'- uGGCCGGuUGCUGGGGcuuGUACGCgGCc -3'
miRNA:   3'- uUUGGCUcACGAUUUUu--CGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 140420 0.66 0.99986
Target:  5'- -cGCCGAG----AGGGAGC-CGCCGCg -3'
miRNA:   3'- uuUGGCUCacgaUUUUUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 63823 0.66 0.99986
Target:  5'- -cACCGGcaGC-----GGCACGCCGCg -3'
miRNA:   3'- uuUGGCUcaCGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 147982 0.66 0.99986
Target:  5'- gGAGCCGgcggcggcgguGGUGgaGGAGGuuGCGCCGCa -3'
miRNA:   3'- -UUUGGC-----------UCACgaUUUUUcgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 128977 0.66 0.99986
Target:  5'- --cCCGAGcUGCUGGAAuccgGGCuGCAagucCCGCa -3'
miRNA:   3'- uuuGGCUC-ACGAUUUU----UCG-UGU----GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.