Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 41440 | 0.66 | 0.999892 |
Target: 5'- uGACCGGG-GUUu--GGGUAC-CCGCg -3' miRNA: 3'- uUUGGCUCaCGAuuuUUCGUGuGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 234717 | 0.66 | 0.999819 |
Target: 5'- cGGACUGgcggaacgacaAGUGCUGugGAGC-CACaCGCa -3' miRNA: 3'- -UUUGGC-----------UCACGAUuuUUCGuGUG-GCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 178663 | 0.66 | 0.999819 |
Target: 5'- cGGCgGuGgcgGC-AAGAAGCACgACCGCg -3' miRNA: 3'- uUUGgCuCa--CGaUUUUUCGUG-UGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 65971 | 0.66 | 0.999819 |
Target: 5'- --cUCGAc-GCUGGAucGCGCACUGCu -3' miRNA: 3'- uuuGGCUcaCGAUUUuuCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 21316 | 0.66 | 0.999892 |
Target: 5'- cAGCCG-GUGCgcGAccGCA-ACCGCg -3' miRNA: 3'- uUUGGCuCACGauUUuuCGUgUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 80761 | 0.66 | 0.999917 |
Target: 5'- --cCCGAGUGCccAAAGAuCACACCc- -3' miRNA: 3'- uuuGGCUCACGa-UUUUUcGUGUGGcg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 79869 | 0.66 | 0.999883 |
Target: 5'- gGAGCCGGGUGaaacgccguccugaCUGGAcGGCGCAgaUUGCa -3' miRNA: 3'- -UUUGGCUCAC--------------GAUUUuUCGUGU--GGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 68316 | 0.66 | 0.999917 |
Target: 5'- gAGGCCGAucUGCUGAAucagaAAGUACAgaCGCa -3' miRNA: 3'- -UUUGGCUc-ACGAUUU-----UUCGUGUg-GCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 130078 | 0.66 | 0.999917 |
Target: 5'- gGAACCGAGgaacGCUAcgcuauGGCcuGCcuGCCGCg -3' miRNA: 3'- -UUUGGCUCa---CGAUuuu---UCG--UG--UGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 20591 | 0.66 | 0.999917 |
Target: 5'- --cUCGAGUGgUucAAAAAGUuCACCGUa -3' miRNA: 3'- uuuGGCUCACgA--UUUUUCGuGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 82609 | 0.66 | 0.999769 |
Target: 5'- cAAACgGGcGUGCUGGGc-GCGCuCCGCg -3' miRNA: 3'- -UUUGgCU-CACGAUUUuuCGUGuGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 113133 | 0.66 | 0.999769 |
Target: 5'- aAGGCgGcGgccGC-AGAGGGCGCGCCGCu -3' miRNA: 3'- -UUUGgCuCa--CGaUUUUUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 234478 | 0.66 | 0.999819 |
Target: 5'- cGACCGAGggGC-GGGGGGCGCggcgacauGCCGUu -3' miRNA: 3'- uUUGGCUCa-CGaUUUUUCGUG--------UGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 96023 | 0.66 | 0.999757 |
Target: 5'- uGGCCGAGcgGCgccaucuuggagGAGGGGCgagucgcggGCACCGCc -3' miRNA: 3'- uUUGGCUCa-CGa-----------UUUUUCG---------UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 26032 | 0.66 | 0.999769 |
Target: 5'- -uGCUGAugGUGCUGAGAAucaugacccuGCGCACCu- -3' miRNA: 3'- uuUGGCU--CACGAUUUUU----------CGUGUGGcg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 232806 | 0.66 | 0.999815 |
Target: 5'- uGACCGgauguuuGGUgGCUAGGguGAGCACcucagccucGCCGCg -3' miRNA: 3'- uUUGGC-------UCA-CGAUUU--UUCGUG---------UGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 90703 | 0.66 | 0.999819 |
Target: 5'- -cACCGAcUGCUGAcugucguGCACaaacuGCCGCa -3' miRNA: 3'- uuUGGCUcACGAUUuuu----CGUG-----UGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 69236 | 0.66 | 0.999769 |
Target: 5'- gAGACCGAccccGcGCUGAucauGCGCgACCGCc -3' miRNA: 3'- -UUUGGCU----CaCGAUUuuu-CGUG-UGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 194779 | 0.66 | 0.999819 |
Target: 5'- cGGACUGgcggaacgacaAGUGCUGugGAGC-CACaCGCa -3' miRNA: 3'- -UUUGGC-----------UCACGAUuuUUCGuGUG-GCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 117399 | 0.66 | 0.999769 |
Target: 5'- --uCUGAGUGCUGc--GGUuccCGCCGCu -3' miRNA: 3'- uuuGGCUCACGAUuuuUCGu--GUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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