miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 232806 0.66 0.999815
Target:  5'- uGACCGgauguuuGGUgGCUAGGguGAGCACcucagccucGCCGCg -3'
miRNA:   3'- uUUGGC-------UCA-CGAUUU--UUCGUG---------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 96023 0.66 0.999757
Target:  5'- uGGCCGAGcgGCgccaucuuggagGAGGGGCgagucgcggGCACCGCc -3'
miRNA:   3'- uUUGGCUCa-CGa-----------UUUUUCG---------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 69236 0.66 0.999769
Target:  5'- gAGACCGAccccGcGCUGAucauGCGCgACCGCc -3'
miRNA:   3'- -UUUGGCU----CaCGAUUuuu-CGUG-UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 117399 0.66 0.999769
Target:  5'- --uCUGAGUGCUGc--GGUuccCGCCGCu -3'
miRNA:   3'- uuuGGCUCACGAUuuuUCGu--GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 231710 0.66 0.999892
Target:  5'- --cCCGGGUcgGCguc--GGCAUGCCGCu -3'
miRNA:   3'- uuuGGCUCA--CGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 128977 0.66 0.99986
Target:  5'- --cCCGAGcUGCUGGAAuccgGGCuGCAagucCCGCa -3'
miRNA:   3'- uuuGGCUC-ACGAUUUU----UCG-UGU----GGCG- -5'
29723 3' -48.3 NC_006273.1 + 100844 0.66 0.999819
Target:  5'- ---aCGuGUGC-GAAGAGCAC-CUGCa -3'
miRNA:   3'- uuugGCuCACGaUUUUUCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 46314 0.66 0.999892
Target:  5'- --cCCGGGcGC-AAGAAGCggccgccuACGCCGCc -3'
miRNA:   3'- uuuGGCUCaCGaUUUUUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194779 0.66 0.999819
Target:  5'- cGGACUGgcggaacgacaAGUGCUGugGAGC-CACaCGCa -3'
miRNA:   3'- -UUUGGC-----------UCACGAUuuUUCGuGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 65971 0.66 0.999819
Target:  5'- --cUCGAc-GCUGGAucGCGCACUGCu -3'
miRNA:   3'- uuuGGCUcaCGAUUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 82609 0.66 0.999769
Target:  5'- cAAACgGGcGUGCUGGGc-GCGCuCCGCg -3'
miRNA:   3'- -UUUGgCU-CACGAUUUuuCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 41440 0.66 0.999892
Target:  5'- uGACCGGG-GUUu--GGGUAC-CCGCg -3'
miRNA:   3'- uUUGGCUCaCGAuuuUUCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 21316 0.66 0.999892
Target:  5'- cAGCCG-GUGCgcGAccGCA-ACCGCg -3'
miRNA:   3'- uUUGGCuCACGauUUuuCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 79869 0.66 0.999883
Target:  5'- gGAGCCGGGUGaaacgccguccugaCUGGAcGGCGCAgaUUGCa -3'
miRNA:   3'- -UUUGGCUCAC--------------GAUUUuUCGUGU--GGCG- -5'
29723 3' -48.3 NC_006273.1 + 71596 0.66 0.999856
Target:  5'- -cACCGugggucccggcgcGGUGUUAGAcaugGGGCAgGCCGUg -3'
miRNA:   3'- uuUGGC-------------UCACGAUUU----UUCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 234478 0.66 0.999819
Target:  5'- cGACCGAGggGC-GGGGGGCGCggcgacauGCCGUu -3'
miRNA:   3'- uUUGGCUCa-CGaUUUUUCGUG--------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 2267 0.67 0.999422
Target:  5'- -uGCUGgugguGGUGCUGGAcGAGCuggGCGCCGUg -3'
miRNA:   3'- uuUGGC-----UCACGAUUU-UUCG---UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 90745 0.67 0.999422
Target:  5'- cGACCGcugcccUGCUu--GAGCACGCCGa -3'
miRNA:   3'- uUUGGCuc----ACGAuuuUUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 42473 0.67 0.999422
Target:  5'- -cACCGAGUGCcGAcucu--CACCGCa -3'
miRNA:   3'- uuUGGCUCACGaUUuuucguGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 89541 0.67 0.999422
Target:  5'- gGAGCCuuGUccucGCgAAAcgucGAGCGCACCGCg -3'
miRNA:   3'- -UUUGGcuCA----CGaUUU----UUCGUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.