Results 41 - 60 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 73173 | 0.67 | 0.99963 |
Target: 5'- -cGCCGcuuccuccgGCUGc--AGCGCACCGCg -3' miRNA: 3'- uuUGGCuca------CGAUuuuUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 58934 | 0.67 | 0.99963 |
Target: 5'- -cACCGAGgcacgGCccuuGAGCGCGCacaGCa -3' miRNA: 3'- uuUGGCUCa----CGauuuUUCGUGUGg--CG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 137474 | 0.67 | 0.99963 |
Target: 5'- -uACUGGGUGCUGccGGGCGgcuuUGCCGUc -3' miRNA: 3'- uuUGGCUCACGAUuuUUCGU----GUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 121633 | 0.67 | 0.999706 |
Target: 5'- -uGCUGAGcUGCau--GAGCACggcGCCGCc -3' miRNA: 3'- uuUGGCUC-ACGauuuUUCGUG---UGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 158353 | 0.67 | 0.999493 |
Target: 5'- aAGGCCGAGcgucguucgcgcgGCgugc--GCACGCCGCu -3' miRNA: 3'- -UUUGGCUCa------------CGauuuuuCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 89541 | 0.67 | 0.999422 |
Target: 5'- gGAGCCuuGUccucGCgAAAcgucGAGCGCACCGCg -3' miRNA: 3'- -UUUGGcuCA----CGaUUU----UUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 42473 | 0.67 | 0.999422 |
Target: 5'- -cACCGAGUGCcGAcucu--CACCGCa -3' miRNA: 3'- uuUGGCUCACGaUUuuucguGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 44771 | 0.67 | 0.999536 |
Target: 5'- ---aCGAGUGUUAcuAGGagauCGCCGCg -3' miRNA: 3'- uuugGCUCACGAUuuUUCgu--GUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 43128 | 0.67 | 0.999706 |
Target: 5'- cAGACCGuacgGGUGU-----GGUAUACCGCg -3' miRNA: 3'- -UUUGGC----UCACGauuuuUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 106972 | 0.67 | 0.99963 |
Target: 5'- cAGGCCGGG-GCgcac-AGCuuaACGCCGCu -3' miRNA: 3'- -UUUGGCUCaCGauuuuUCG---UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 14109 | 0.67 | 0.999706 |
Target: 5'- cGGACCGccgGCUGuuucuGCGCACCGg -3' miRNA: 3'- -UUUGGCucaCGAUuuuu-CGUGUGGCg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 233507 | 0.67 | 0.999706 |
Target: 5'- gGAAUCGuGUGCgcGAAAGCcuguuCGCgGCa -3' miRNA: 3'- -UUUGGCuCACGauUUUUCGu----GUGgCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 26472 | 0.67 | 0.999285 |
Target: 5'- -cACCG-GUGUUGGuucuGGGCGCGCUGg -3' miRNA: 3'- uuUGGCuCACGAUUu---UUCGUGUGGCg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 115458 | 0.67 | 0.999285 |
Target: 5'- uGGACCGcGUGCccguuAGCGgACUGCa -3' miRNA: 3'- -UUUGGCuCACGauuuuUCGUgUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 2267 | 0.67 | 0.999422 |
Target: 5'- -uGCUGgugguGGUGCUGGAcGAGCuggGCGCCGUg -3' miRNA: 3'- uuUGGC-----UCACGAUUU-UUCG---UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 55454 | 0.67 | 0.999422 |
Target: 5'- uGAGUCGGGcGgUGGccGGCACGCCGCa -3' miRNA: 3'- -UUUGGCUCaCgAUUuuUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 197160 | 0.67 | 0.999422 |
Target: 5'- -uGCUGgugguGGUGCUGGAcGAGCuggGCGCCGUg -3' miRNA: 3'- uuUGGC-----UCACGAUUU-UUCG---UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 185414 | 0.67 | 0.999422 |
Target: 5'- cGGCCGAcGUGgUGGAcca-GCACCGCg -3' miRNA: 3'- uUUGGCU-CACgAUUUuucgUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 105453 | 0.67 | 0.999536 |
Target: 5'- -cACCGucGGcGCUAcaAGGAGUcgGCGCCGCa -3' miRNA: 3'- uuUGGC--UCaCGAU--UUUUCG--UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 55941 | 0.67 | 0.999536 |
Target: 5'- cAACCGuuuGgccaGCUGAGAcgcAGCACcguGCCGCu -3' miRNA: 3'- uUUGGCu--Ca---CGAUUUU---UCGUG---UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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