miRNA display CGI


Results 61 - 80 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 64693 0.67 0.999329
Target:  5'- cAGACCGAGgcGCUGgacgccaucauggaaGAGGGCGCGCgucuggaCGCg -3'
miRNA:   3'- -UUUGGCUCa-CGAU---------------UUUUCGUGUG-------GCG- -5'
29723 3' -48.3 NC_006273.1 + 94252 0.67 0.999285
Target:  5'- --uCCGGccGUGCUGcgGuccGCACGCUGCg -3'
miRNA:   3'- uuuGGCU--CACGAUuuUu--CGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 73753 0.67 0.999285
Target:  5'- cGGCCGAG-GCccGGcAGCGgCGCCGCc -3'
miRNA:   3'- uUUGGCUCaCGauUUuUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 52535 0.67 0.999285
Target:  5'- gGGGCCGuuGUGCUGcagcagccGAGCucguCGCCGCc -3'
miRNA:   3'- -UUUGGCu-CACGAUuu------UUCGu---GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 73173 0.67 0.99963
Target:  5'- -cGCCGcuuccuccgGCUGc--AGCGCACCGCg -3'
miRNA:   3'- uuUGGCuca------CGAUuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 197308 0.67 0.999699
Target:  5'- -cGCCGAGgccgcgcggcggcUGCUGcccGAGCugGaCCGCg -3'
miRNA:   3'- uuUGGCUC-------------ACGAUuu-UUCGugU-GGCG- -5'
29723 3' -48.3 NC_006273.1 + 121633 0.67 0.999706
Target:  5'- -uGCUGAGcUGCau--GAGCACggcGCCGCc -3'
miRNA:   3'- uuUGGCUC-ACGauuuUUCGUG---UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 55941 0.67 0.999536
Target:  5'- cAACCGuuuGgccaGCUGAGAcgcAGCACcguGCCGCu -3'
miRNA:   3'- uUUGGCu--Ca---CGAUUUU---UCGUG---UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 14109 0.67 0.999706
Target:  5'- cGGACCGccgGCUGuuucuGCGCACCGg -3'
miRNA:   3'- -UUUGGCucaCGAUuuuu-CGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 189906 0.67 0.999536
Target:  5'- aAAACC-AGcugGUUGAAGAGCGCGCacaCGCg -3'
miRNA:   3'- -UUUGGcUCa--CGAUUUUUCGUGUG---GCG- -5'
29723 3' -48.3 NC_006273.1 + 133117 0.67 0.999706
Target:  5'- --cCCGucUGCUG--GAGCACugCGUg -3'
miRNA:   3'- uuuGGCucACGAUuuUUCGUGugGCG- -5'
29723 3' -48.3 NC_006273.1 + 112272 0.67 0.999706
Target:  5'- uGGACCGGGUGCgcAAAcGGUAU-CUGCg -3'
miRNA:   3'- -UUUGGCUCACGauUUU-UCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 23079 0.68 0.998926
Target:  5'- cGAACCGucccuGUGaCUAAAcuGUACACCaGCc -3'
miRNA:   3'- -UUUGGCu----CAC-GAUUUuuCGUGUGG-CG- -5'
29723 3' -48.3 NC_006273.1 + 211655 0.68 0.998104
Target:  5'- cAGCUGcAGagGCUAAAAAGCACGCaaGCc -3'
miRNA:   3'- uUUGGC-UCa-CGAUUUUUCGUGUGg-CG- -5'
29723 3' -48.3 NC_006273.1 + 79825 0.68 0.998423
Target:  5'- gGAGCCGAc-GCUGAAAcGCcgACGCUGCu -3'
miRNA:   3'- -UUUGGCUcaCGAUUUUuCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 221489 0.68 0.998591
Target:  5'- cAGCCGGGUGCccgaccgUGAAGAGCccucauccaccugaACagACCGCu -3'
miRNA:   3'- uUUGGCUCACG-------AUUUUUCG--------------UG--UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 51918 0.68 0.998695
Target:  5'- uGugCGcGUGCUGAcggacgugGGAGCGCACCu- -3'
miRNA:   3'- uUugGCuCACGAUU--------UUUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 154936 0.68 0.998104
Target:  5'- cGACCGAGgagaUGUUGcguGAGCugGCgCGCg -3'
miRNA:   3'- uUUGGCUC----ACGAUuu-UUCGugUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 194673 0.68 0.998104
Target:  5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3'
miRNA:   3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 112094 0.68 0.999121
Target:  5'- -cAUCGAGUGgaAGGcGGCAUcucgggGCCGCg -3'
miRNA:   3'- uuUGGCUCACgaUUUuUCGUG------UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.