miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 226771 1.12 0.015135
Target:  5'- cAAACCGAGUGCUAAAAAGCACACCGCg -3'
miRNA:   3'- -UUUGGCUCACGAUUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 94153 0.8 0.731214
Target:  5'- uGAGCCG-GUGCUGcgguccguAGGUACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUuu------UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194432 0.77 0.844213
Target:  5'- gAAACCG-GUGCUGGGcAAGCgagucgcgACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUUU-UUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 201957 0.75 0.904014
Target:  5'- -cGCCGGG-GCUGuc--GCGCGCCGCc -3'
miRNA:   3'- uuUGGCUCaCGAUuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 37411 0.75 0.916523
Target:  5'- cGACUGAGcGCc--GGGGCGCGCCGCu -3'
miRNA:   3'- uUUGGCUCaCGauuUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 22140 0.75 0.928003
Target:  5'- uAACCGGGUGCUGAuAAGaCGgACUGUu -3'
miRNA:   3'- uUUGGCUCACGAUUuUUC-GUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 222862 0.74 0.938449
Target:  5'- -cGCCugGAGUGCgcAGAGGCACgcauucGCCGCg -3'
miRNA:   3'- uuUGG--CUCACGauUUUUCGUG------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 163136 0.74 0.938449
Target:  5'- cGGCUGAG-GCggcGGAGGCAcCACCGCa -3'
miRNA:   3'- uUUGGCUCaCGau-UUUUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 133146 0.74 0.942814
Target:  5'- ---gCGGGUGCUAAGAAGCuGCucuugcucgacguGCCGCg -3'
miRNA:   3'- uuugGCUCACGAUUUUUCG-UG-------------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 36551 0.74 0.943286
Target:  5'- gAGGCCGAGaGCcccAGAucGCGCGCCGUg -3'
miRNA:   3'- -UUUGGCUCaCGa--UUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 171542 0.73 0.956281
Target:  5'- gAGAgCGGGUGCgugGGAGAGguCACuCGCg -3'
miRNA:   3'- -UUUgGCUCACGa--UUUUUCguGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 178546 0.73 0.967085
Target:  5'- --cCCGGGUGCUugcaacacGAGGAGUAaacUACCGCg -3'
miRNA:   3'- uuuGGCUCACGA--------UUUUUCGU---GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 207338 0.73 0.967085
Target:  5'- gGGGCUGGGUGgaGaggGAAGGuCGCGCCGCc -3'
miRNA:   3'- -UUUGGCUCACgaU---UUUUC-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 144646 0.73 0.970224
Target:  5'- gGAGCCGcguGUGCUGAucGAGGCGgCGuuGCg -3'
miRNA:   3'- -UUUGGCu--CACGAUU--UUUCGU-GUggCG- -5'
29723 3' -48.3 NC_006273.1 + 193801 0.73 0.970224
Target:  5'- gAAGCCGAGgagGCUAu--GGCGCgGCgGCg -3'
miRNA:   3'- -UUUGGCUCa--CGAUuuuUCGUG-UGgCG- -5'
29723 3' -48.3 NC_006273.1 + 50224 0.72 0.973143
Target:  5'- --uCUGGGUGCUGuuGAGCuGC-CCGCg -3'
miRNA:   3'- uuuGGCUCACGAUuuUUCG-UGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 16610 0.72 0.973143
Target:  5'- uGGCCGAGUGCgAAAuguacGuCACGCUGCa -3'
miRNA:   3'- uUUGGCUCACGaUUUuu---C-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 153994 0.72 0.973143
Target:  5'- cAGACCGAGgcGCUGGAGAGC-CGCUa- -3'
miRNA:   3'- -UUUGGCUCa-CGAUUUUUCGuGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 203587 0.72 0.982769
Target:  5'- -cGCCGGGUGCUcgcguAGAGCGCGuagUCGUa -3'
miRNA:   3'- uuUGGCUCACGAuu---UUUCGUGU---GGCG- -5'
29723 3' -48.3 NC_006273.1 + 33393 0.71 0.986472
Target:  5'- -uGCCaGAGUaggcGCUGGAc-GCGCACCGCc -3'
miRNA:   3'- uuUGG-CUCA----CGAUUUuuCGUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.