miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 140983 0.71 0.988078
Target:  5'- cGGCCGAG-GUcc-GGAGCGgGCCGCg -3'
miRNA:   3'- uUUGGCUCaCGauuUUUCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 13598 0.71 0.988078
Target:  5'- cGGGCCGccGUGCUGGAGGGC-CGCCcCa -3'
miRNA:   3'- -UUUGGCu-CACGAUUUUUCGuGUGGcG- -5'
29723 3' -48.3 NC_006273.1 + 29681 0.71 0.988078
Target:  5'- cAAACCGAG-GCUcc-AGGCGCGCaacaGCg -3'
miRNA:   3'- -UUUGGCUCaCGAuuuUUCGUGUGg---CG- -5'
29723 3' -48.3 NC_006273.1 + 75211 0.71 0.988078
Target:  5'- cAACUGAGcUGCUAu--GGCACGcgcacCCGCg -3'
miRNA:   3'- uUUGGCUC-ACGAUuuuUCGUGU-----GGCG- -5'
29723 3' -48.3 NC_006273.1 + 141176 0.71 0.988078
Target:  5'- -cGCCGGGggGCggc-GGGCACGCCGg -3'
miRNA:   3'- uuUGGCUCa-CGauuuUUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 178971 0.71 0.989532
Target:  5'- uGGGCCGcGUGcCUGGGAAcguGCGCACgGCg -3'
miRNA:   3'- -UUUGGCuCAC-GAUUUUU---CGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 148186 0.71 0.989532
Target:  5'- cGAGCCGcGUGUggucacGCAUGCCGCg -3'
miRNA:   3'- -UUUGGCuCACGauuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 1796 0.71 0.990843
Target:  5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3'
miRNA:   3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 107009 0.71 0.990843
Target:  5'- --gUCGAcUGCU----AGCACACCGCg -3'
miRNA:   3'- uuuGGCUcACGAuuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 196688 0.71 0.990843
Target:  5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3'
miRNA:   3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 15087 0.71 0.990843
Target:  5'- uGGGCUGuccGUGCUAAucuGGcCACGCCGUg -3'
miRNA:   3'- -UUUGGCu--CACGAUUuu-UC-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 104912 0.7 0.992022
Target:  5'- cGACUGAgaacgaagGUGCUcAGGuGGCACACCGUc -3'
miRNA:   3'- uUUGGCU--------CACGA-UUUuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 177043 0.7 0.992022
Target:  5'- -cGCC-AGcgcgcGCUGGGAAGCGCugCGCg -3'
miRNA:   3'- uuUGGcUCa----CGAUUUUUCGUGugGCG- -5'
29723 3' -48.3 NC_006273.1 + 91989 0.7 0.993077
Target:  5'- -cGCCGGcGUGCuUAAAGAGCaACGCCu- -3'
miRNA:   3'- uuUGGCU-CACG-AUUUUUCG-UGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 198747 0.7 0.993077
Target:  5'- -cGCCGcucguUGCgccuacguAGAGGCGCACCGCg -3'
miRNA:   3'- uuUGGCuc---ACGau------UUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 144974 0.7 0.994017
Target:  5'- aAGGCCGAGUGUUcgGAAGUgaucguguuugACGCCaaGCa -3'
miRNA:   3'- -UUUGGCUCACGAuuUUUCG-----------UGUGG--CG- -5'
29723 3' -48.3 NC_006273.1 + 203724 0.7 0.994017
Target:  5'- cAGCUG-GUGCUGGAGAuaGCAgCGCa -3'
miRNA:   3'- uUUGGCuCACGAUUUUUcgUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 118550 0.7 0.994017
Target:  5'- -cACCGuGauaccCUAAuAAAGCACACCGCg -3'
miRNA:   3'- uuUGGCuCac---GAUU-UUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 147054 0.7 0.994852
Target:  5'- uGGCCGAcGUGCUcaucAAAcGCucGCGCCGCg -3'
miRNA:   3'- uUUGGCU-CACGAu---UUUuCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 36752 0.69 0.99545
Target:  5'- cAGACCGGGcuccgGCggguggccuGAGCACGCCGa -3'
miRNA:   3'- -UUUGGCUCa----CGauuu-----UUCGUGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.