miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 209472 0.69 0.99559
Target:  5'- aAAugCGAGacgGCUAGAcagguaauGAGCACGCUGa -3'
miRNA:   3'- -UUugGCUCa--CGAUUU--------UUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 68116 0.69 0.99559
Target:  5'- uGACCGAGacuagcgagcgGCUAGAucGCuCGCUGCg -3'
miRNA:   3'- uUUGGCUCa----------CGAUUUuuCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 92301 0.69 0.99559
Target:  5'- -cGCUGAG-GCUGuAAucGCACAgCGCg -3'
miRNA:   3'- uuUGGCUCaCGAU-UUuuCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 203899 0.69 0.996239
Target:  5'- -uGCCGAuaGagauAGAGCGCGCCGCg -3'
miRNA:   3'- uuUGGCUcaCgauuUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 29179 0.69 0.996239
Target:  5'- -uACCGAGUagaGUauuccGAGGCGCGCUGCg -3'
miRNA:   3'- uuUGGCUCA---CGauu--UUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 212836 0.69 0.996239
Target:  5'- -uGCCG-GUGUUGAucagcAAGCACGCCa- -3'
miRNA:   3'- uuUGGCuCACGAUUu----UUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 160096 0.69 0.996476
Target:  5'- uGGCgGGGUGUUGAggauucaccugguauGAGGCGgcCGCCGCg -3'
miRNA:   3'- uUUGgCUCACGAUU---------------UUUCGU--GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 62682 0.69 0.996754
Target:  5'- cGAUCGcGUGCUGGAAGaccacuuGCauACGCCGCg -3'
miRNA:   3'- uUUGGCuCACGAUUUUU-------CG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 105847 0.69 0.996808
Target:  5'- cAGCCGAG-GCggcgcGGCGCAgCGCc -3'
miRNA:   3'- uUUGGCUCaCGauuuuUCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 58467 0.69 0.996808
Target:  5'- cAAAUCGAc-GCUAGc--GCGCACCGCg -3'
miRNA:   3'- -UUUGGCUcaCGAUUuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 24415 0.69 0.996808
Target:  5'- cGGCCGugguggccGUGCUGGGcuGGGUGCAUCGCu -3'
miRNA:   3'- uUUGGCu-------CACGAUUU--UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 101274 0.69 0.997303
Target:  5'- -cGCCGAGUGCgc---GGCGCACa-- -3'
miRNA:   3'- uuUGGCUCACGauuuuUCGUGUGgcg -5'
29723 3' -48.3 NC_006273.1 + 1021 0.69 0.997303
Target:  5'- uGGugCGAGUGCUGcgccuacGGCgACGCCGg -3'
miRNA:   3'- -UUugGCUCACGAUuuu----UCG-UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 122781 0.69 0.997303
Target:  5'- --cCCGGGcaacgGCUGcucGGCGCACUGCg -3'
miRNA:   3'- uuuGGCUCa----CGAUuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 195914 0.69 0.997303
Target:  5'- uGGugCGAGUGCUGcgccuacGGCgACGCCGg -3'
miRNA:   3'- -UUugGCUCACGAUuuu----UCG-UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 90821 0.69 0.997303
Target:  5'- cAGACCGAG-GCc--GucGCGCACCGg -3'
miRNA:   3'- -UUUGGCUCaCGauuUuuCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 114559 0.69 0.997733
Target:  5'- aAGGCCGAGUccaccgucGCgcccGAAGAGgACACCGa -3'
miRNA:   3'- -UUUGGCUCA--------CGa---UUUUUCgUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 98027 0.69 0.997733
Target:  5'- aAAGCCcGGUGCgAGGAcaaCGCGCCGCg -3'
miRNA:   3'- -UUUGGcUCACGaUUUUuc-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 99787 0.69 0.997733
Target:  5'- cGGCCGGcGUGCguauGAGGUagcuguacACGCCGCu -3'
miRNA:   3'- uUUGGCU-CACGauu-UUUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 61575 0.69 0.997888
Target:  5'- cGGCCGGGUcGCgcggccguuuGGC-CACCGCg -3'
miRNA:   3'- uUUGGCUCA-CGauuuu-----UCGuGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.