miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 211655 0.68 0.998104
Target:  5'- cAGCUGcAGagGCUAAAAAGCACGCaaGCc -3'
miRNA:   3'- uUUGGC-UCa-CGAUUUUUCGUGUGg-CG- -5'
29723 3' -48.3 NC_006273.1 + 234611 0.68 0.998104
Target:  5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3'
miRNA:   3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 154936 0.68 0.998104
Target:  5'- cGACCGAGgagaUGUUGcguGAGCugGCgCGCg -3'
miRNA:   3'- uUUGGCUC----ACGAUuu-UUCGugUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 177244 0.68 0.998104
Target:  5'- -cACCGuGGUGCg--GAGGC-CGCUGCg -3'
miRNA:   3'- uuUGGC-UCACGauuUUUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194673 0.68 0.998104
Target:  5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3'
miRNA:   3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 193449 0.68 0.998423
Target:  5'- gAAACCGGGaaCUAGcggcAAGgGCGCCGCu -3'
miRNA:   3'- -UUUGGCUCacGAUUu---UUCgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 107391 0.68 0.998423
Target:  5'- gGAACCcaugggcGGUGC-----GGCGCGCCGCa -3'
miRNA:   3'- -UUUGGc------UCACGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 168619 0.68 0.998423
Target:  5'- -cGCCGAGccgcgGCUGcccgGGucGCGCACCaGCg -3'
miRNA:   3'- uuUGGCUCa----CGAU----UUuuCGUGUGG-CG- -5'
29723 3' -48.3 NC_006273.1 + 119395 0.68 0.998423
Target:  5'- cGGCCGuGUucgaUGAAAcGCGCGCCGCc -3'
miRNA:   3'- uUUGGCuCAcg--AUUUUuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 145131 0.68 0.998423
Target:  5'- cGACgCGcgcaaGGUGCUcAAguuucAAGGCGCGCCGCu -3'
miRNA:   3'- uUUG-GC-----UCACGA-UU-----UUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 183537 0.68 0.998423
Target:  5'- aAAGCa-GGUGCU-GGAAGCGCGUCGCg -3'
miRNA:   3'- -UUUGgcUCACGAuUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 183752 0.68 0.998423
Target:  5'- ---aCGGGUGCUGuc---CGCGCCGCc -3'
miRNA:   3'- uuugGCUCACGAUuuuucGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 71954 0.68 0.998423
Target:  5'- cAugCGAcUGCUGGGGGGCcaACGCCGg -3'
miRNA:   3'- uUugGCUcACGAUUUUUCG--UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 79825 0.68 0.998423
Target:  5'- gGAGCCGAc-GCUGAAAcGCcgACGCUGCu -3'
miRNA:   3'- -UUUGGCUcaCGAUUUUuCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 221489 0.68 0.998591
Target:  5'- cAGCCGGGUGCccgaccgUGAAGAGCccucauccaccugaACagACCGCu -3'
miRNA:   3'- uUUGGCUCACG-------AUUUUUCG--------------UG--UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 51918 0.68 0.998695
Target:  5'- uGugCGcGUGCUGAcggacgugGGAGCGCACCu- -3'
miRNA:   3'- uUugGCuCACGAUU--------UUUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 233469 0.68 0.998926
Target:  5'- aAAACCaGGUGCUGAcgccagacAGAG-ACGCCGUc -3'
miRNA:   3'- -UUUGGcUCACGAUU--------UUUCgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 23079 0.68 0.998926
Target:  5'- cGAACCGucccuGUGaCUAAAcuGUACACCaGCc -3'
miRNA:   3'- -UUUGGCu----CAC-GAUUUuuCGUGUGG-CG- -5'
29723 3' -48.3 NC_006273.1 + 185274 0.68 0.999121
Target:  5'- cGACCGcagcGGUgGCUgGAGAAGCGCAgCGUc -3'
miRNA:   3'- uUUGGC----UCA-CGA-UUUUUCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 112094 0.68 0.999121
Target:  5'- -cAUCGAGUGgaAGGcGGCAUcucgggGCCGCg -3'
miRNA:   3'- uuUGGCUCACgaUUUuUCGUG------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.